Figure 6.

Examples of introns affected in splicing efficiency in coilin mutants. The number of reads for several introns that show either more-efficient splicing (MES; upper part) or increased intron retention (IR; lower part) in coilin mutants containing either the hgf1-8 or hgf1-1 allele compared with the wild-type T line are visualized by the Integrative Genomic Viewer. The target intron and the exons before and after the intron are shown by the blue bars and blue boxes, respectively. The Arabidopsis Genome Initiative (AGI) number for the target intron-containing gene and the range for counting the reads are shown at the top and bottom of each figure. The numbers on the left side of each figure indicate the number of technical replicates for each indicated plant line. The genes shown here are not among those that are differentially expressed genes in the T and coilin mutant lines.