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. 2016 Aug 11;11(8):e0158621. doi: 10.1371/journal.pone.0158621

Table 2. KEGG Pathway Enrichment Analysis of DEGs.

Pathway DEGs with pathway annotation (295) Corr_p_value Pathway ID
E01vsE03
photosynthesis-antenna proteins 17(5.76%) 3.9696E-13 ko00196
Glucosinolate biosynthesis 12(4.07%) 9.851E-09 ko00966
Circadian rhythm-plant 10(3.39%) 0.0055894 ko04712
Photosynthesis 17(5.76%) 0.011105 ko00195
Porphyrin and chlorophyll metabolism 11(3.73%) 0.024087 ko00860
E02vsE04
Photosynthesis-antenna proteins 12(8.39%) 3.38E-10 ko00196
Phenylalanine metabolism 13(9.09%) 4.46E-03 ko00360
Stilbenoid,diarylheptanoid and gingerol biosynthesis 11(7.69%) 4.95E-03 ko00945
Limonene and pinene degradation 11(7.69%) 7.40E-03 ko00903
Circadian rhythm-plant 7(4.90%) 7.44E-03 ko04712
Phenypropanoid biosynthesis 13(9.09%) 2.54E-02 ko00940
E05vsE07
Photosynthesis-antenna proteins 17(8.06%) 1.02579E-15 ko00196
Circadian rhythm-plant 9(4.27%) 0.001928044 ko04712
Photosynthesis 15(7.11%) 0.002216224 ko00195
E06vsE08
Oxidative phoshorlation 22(24.18%) 3.15E-09 ko00190
Photosynthesis 14(15.38%) 1.86E-07 ko00195
Phenylpropanoid biosynthesis 11(12.09%) 3.99E-03 ko00940
Phenylalanine metabolism 10(10.99%) 4.63E-03 ko00360

corr_p_value represent the significance of enrichment; the value is smaller, the significance is higher. Pathway ID represent the KEGG pathway number. Based on sequence homology, 295 differentially expressed genes could be categorized into KEGG pathways.