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. 2016 Aug 11;11(8):e0161202. doi: 10.1371/journal.pone.0161202

Table 1. Primers used for relative qPCR to validate RNA-sequencing results.

Melt peaks listed were obtained on a BioRad CFX Connect Real-Time System and may vary by -/+ 1°C depending on the thermocycler.

Gene Symbol Primer Sequence(5' to 3') Reference Gene Product Size (bp) Melt Peak (°C)
ADIPOR1 FOR: TCCTGCCAGTAACAGGGAAG Actin 168 86.5
REV: AGGGGAAGTGTCAGTACCCG
AKT1 FOR: GTGGACCAACGTGAGGCTC RPII 132 88.0
REV: GAAGGTGCGTTCGATGACAG
BCAR3 FOR: CAGAAACATGCCGGTGAATCA Actin, RPII 209 86.0–86.5
REV: GTGGGGATTTGGAGTGGGG
B2M FOR: GCTATCCAGCGTACTCCAAAG Actin 180 82.0–82.5
REV: TCACACGGCAGGCATACT
CCND1 FOR: CAATGACCCCGCACGATTTC Actin 146 85.0
REV: CATGGAGGGCGGATTGGAA
CCND2 FOR: ACCTTCCGCAGTGCTCCTA Actin 161 85.5
REV: CCCAGCCAAGAAACGGTCC
CSF1 FOR: AGACCTCGTGCCAAATTACATT Actin 248 84.5–85.0
REV: AGGTGTCTCATAGAAAGTTCGGA
FASN FOR: ACAGCGGGGAATGGGTACT RPII 136 88.0
REV: GACTGGTACAACGAGCGGAT
GSTM3 FOR: TACCTCTTATGAGGAGAAACGGT Actin, RPII 100 82.0–82.5
REV: AGGAAAGTCCAGGTCTAGCTTG
MYC FOR: GTCAAGAGGCGAACACACAAC Actin 130 84.5–85.0
REV: TTGGACGGACAGGATGTATGC
PANX1 FOR: GCTCTTTGCGATCCTCCTGTA Actin 118 83.5
REV: TGCACGGTTGTAAACTTTGTCAA
SCD FOR: ACCGCTCTTACAAAGCTCGG Actin 154 84.5
REV: CCACGTCGGGAATTATGAGGAT
SLC1A1 FOR: TTCTAATGCGGATGCTGAAACT Actin 146 81.0
REV: CGCGCAGACCAATTTTTCC
SLC1A3 FOR: AGCAGGGAGTCCGTAAACG Actin 120 80.0–80.5
REV: AGCATTCCGAAACAGGTAACTTT
SLC7A11 (xCT) FOR: CCTCTATTCGGACCCATTTAG Actin 99 80.0–80.5
REV: CTGGGTTTCTTGTCCCATATA
SLC25A1 FOR: TTCCCCACCGAGTACGTGAA RPII 147 89.5–90.0
REV: GTAGAGCAGGGAGCTAAGGC
SOCS3 FOR: CCTGCGCCTCAAGACCTTC Actin 99 87.0
REV: GTCACTGCGCTCCAGTAGAA
SUMO3 FOR: GAATGACCACATCAACCTGAAGG RPII 152 87.5–88.0
REV: GCCCGTCGAACCTGAATCT