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Main characteristics of Trinity de novo transcriptome assembly
| Parameters | All transcript | Only longest Isoform |
|---|---|---|
| Number of contigs | 29621 | 19860 |
| Contig N10 | 6773 | 5525 |
| Contig N20 | 5345 | 4321 |
| Contig N30 | 4365 | 3572 |
| Contig N40 | 3667 | 2971 |
| Contig N50 | 3135 | 2472 |
| Median contig length | 1242 | 658 |
| Average contig | 1798.4 | 1310.58 |
| Total assembled bases | 53270493 | 27680863 |
