Table 3.
Significant marker-trait associations with identified genomic regions and chromosome location for each inoculated trait and model
| Trait | Marker | Chr.a | Chr. position (bpb) | QTL | Minor allele frequency | Additive effect | PVEc | p-value |
|---|---|---|---|---|---|---|---|---|
| Inoculated Root Rot Score | ss715585712 | 3 | 3852888 | 3-1 | 0.18 | 0.096 | 3.162 | 9.14E-08 |
| ss715585728 | 3 | 3865730 | 3-1 | 0.18 | 0.0967 | 3.212 | 7.26E-08 | |
| ss715586320 | 3 | 4276534 | 3-2 | 0.21 | 0.0922 | 3.018 | 1.77E-07 | |
| ss715586321 | 3 | 4277380 | 3-2 | 0.21 | 0.0936 | 3.133 | 1.04E-07 | |
| ss715586376 | 3 | 4315512 | 3-3 | 0.2 | 0.1039 | 3.895 | 3.27E-09 | |
| Inoculated Root weight | ss715615031 | 13 | 30766058 | 13-1 | 0.42 | −0.0695 | 2.468 | 1.44E-06 |
| Inoculated Root Rot Score | ss715635897 | 19 | 49121258 | 19-1 | 0.01 | −0.4622 | 2.513 | 1.82E-06 |
| ss715635934 | 19 | 49461582 | 19-2 | 0.01 | −0.4622 | 2.513 | 1.82E-06 | |
| ss715636056 | 19 | 50544363 | 19-3 | 0.01 | −0.4622 | 2.513 | 1.82E-06 | |
| ss715636059 | 19 | 50555433 | 19-3 | 0.01 | −0.4622 | 2.513 | 1.82E-06 | |
| ss715636064 | 19 | 50604933 | 19-3 | 0.01 | −0.4622 | 2.513 | 1.82E-06 | |
| ss715636073 | 19 | 50663466 | 19-3 | 0.01 | −0.4622 | 2.513 | 1.82E-06 | |
| ss715636076 | 19 | 50666563 | 19-3 | 0.01 | −0.4622 | 2.513 | 1.82E-06 | |
| ss715636077 | 19 | 50668662 | 19-3 | 0.01 | −0.4622 | 2.513 | 1.82E-06 | |
| ss715636083 | 19 | 50679714 | 19-3 | 0.01 | −0.4622 | 2.513 | 1.82E-06 | |
| ss715636084 | 19 | 50681263 | 19-3 | 0.01 | −0.4622 | 2.513 | 1.82E-06 |
a Chr chromosome
b bp basepair position in the Glyma.Wm82.a2 assembly
c PVE percent variance explained