Table 3.
Enrichment pathway analysis of DEGs in P. digitatum
| Pathway | DEGs genes with pathway annotation (3232) | All genes with pathway annotation (8714) | Pathway ID |
|---|---|---|---|
| ABC transporters | 64 (1.98 %) | 134 (1.54 %) | ko02010 |
| Ribosome biogenesis in eukaryotes | 78 (2.41 %) | 171 (1.96 %) | ko03008 |
| Alanine, aspartate and glutamate metabolism | 40 (1.24 %) | 83 (0.95 %) | ko00250 |
| Starch and sucrose metabolism | 175 (5.41 %) | 426 (4.89 %) | ko00500 |
| RNA degradation | 91 (2.82 %) | 213 (2.44 %) | ko03018 |
| Fatty acid biosynthesis | 28 (0.87 %) | 62 (0.71 %) | ko00061 |
| Non-homologous end-joining | 21 (0.65 %) | 45 (0.52 %) | ko03450 |
| MAPK signaling pathway | 88 (2.72 %) | 221 (2.54 %) | ko04011 |
| Amino sugar and nucleotide sugar metabolism | 98 (3.03 %) | 248 (2.85 %) | ko00520 |
| Fructose and mannose metabolism | 90 (2.78 %) | 230 (2.64 %) | ko00051 |
| Phosphatidylinositol signaling system | 22 (0.68 %) | 53 (0.61 %) | ko04070 |
| Sulfur metabolism | 16 (0.5 %) | 38 (0.44 %) | ko00920 |
| Nitrogen metabolism | 38 (1.18 %) | 98 (1.12 %) | ko00910 |
| Meiosis | 80 (2.48 %) | 210 (2.41 %) | ko04113 |
| Inositol phosphate metabolism | 30 (0.93 %) | 79 (0.91 %) | ko00562 |
| Purine metabolism | 121 (3.74 %) | 326 (3.74 %) | ko00230 |
| Citrate cycle (TCA cycle) | 21 (0.65 %) | 56 (0.64 %) | ko00020 |
| Linoleic acid metabolism | 36 (1.11 %) | 97 (1.11 %) | ko00591 |
| Glycolysis/Gluconeogenesis | 64 (1.98 %) | 173 (1.99 %) | ko00010 |
| mRNA surveillance pathway | 55 (1.7 %) | 150 (1.72 %) | ko03015 |
| Glutathione metabolism | 29 (0.9 %) | 80 (0.92 %) | ko00480 |
| Pentose phosphate pathway | 17 (0.53 %) | 48 (0.55 %) | ko00030 |
| RNA transport | 94 (2.91 %) | 267 (3.06 %) | ko03013 |
| Pyrimidine metabolism | 86 (2.66 %) | 247 (2.83 %) | ko00240 |
| RNA polymerase | 24 (0.74 %) | 73 (0.84 %) | ko03020 |
| DNA replication | 32 (0.99 %) | 96 (1.1 %) | ko03030 |
| Peroxisome | 42 (1.3 %) | 127 (1.46 %) | ko04146 |
| Steroid biosynthesis | 20 (0.62 %) | 64 (0.73 %) | ko00100 |
| Oxidative phosphorylation | 47 (1.45 %) | 144 (1.65 %) | ko00190 |
| Biosynthesis of unsaturated fatty acids | 14 (0.43 %) | 53 (0.61 %) | ko01040 |
| Fatty acid metabolism | 43 (1.33 %) | 147 (1.69 %) | ko00071 |
| Aminoacyl-tRNA biosynthesis | 29 (0.9 %) | 109 (1.25 %) | ko00970 |
| Plant-pathogen interaction | 1 (0.03 %) | 11 (0.13 %) | ko04626 |
| Ribosome | 33 (1.02 %) | 224 (2.57 %) | ko03010 |