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. 2016 Aug 12;17:627. doi: 10.1186/s12864-016-2992-8

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© The Author(s). 2016

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Venn diagram illustrating the numbers of significant differentially expressed contigs (DECs). Overlapping areas represent DECs common to different inoculation treatments. The figure compares the following pairs of oak microcuttings during root flush and shoot flush: Control versus Pratylenchus penetrans (Co-Pp), Control versus Piloderma croceum (Co-Pc) and Control versus sequential-inoculation of P. penetrans and P. croceum (Co-PpPc). FDR cut-off = 0.01