Table 1.
Sample | Reference | # reads | Reads, bp | % contam | % target |
---|---|---|---|---|---|
CFA12 | canFam3 | 746,338 | 198,383,243 | 1.3 | 40.2 |
BTAMix | bosTau7 | 708,228 | 184,977,360 | 1.1 | 49.3 |
CPYB1 | bosTau7 | 1,033,322 | 304,920,244 | 1.7 | 13.8 |
CPYB2 | bosTau7 | 886,978 | 268,895,542 | 1.1 | 12.7 |
MGOB | bosTau7 | 716,158 | 239,022,974 | 4.2 | 31.9 |
Samples: CFA12 – dog chromosome 12; BTAMix – cattle sorting peak with chromosomes 23, 26, 28, and 29; CPYB1, CPYB2 – Siberian roe deer B chromosomes (technical replicates); MGOB – grey brocket deer B chromosomes. # reads, reads bp – initial number and volume of sequence reads. # contam – percent of reads mapped to human genome (see text for details). # target – percent of reads mapped to target genome with MAPQ > 20 after contamination removal