Table 5.

Number of differentially expressed transcription factors (TFs) on NL1-I and BCMV-S2 virus infections

	NL1-I	BCMV-S2
Number of Detected TF Families	33	21
Number of Detected TFs	246 (5.26 %)	101 (4.81 %)
Upregulated	138 (2.95 %)	56 (2.67 %)
Downregulated	108 (2.31 %)	45 (2.14 %)

Significant DE genes (padj < 0.05) were used to identify putative TFs for individual virus treatment. Hidden Markov Motifs (HMM) representing 61 different legume transcription factor families [44] were compared against the DE genes and putative TFs were detected using 90 % sequence homology and e-value ≤ 10⁻¹⁰