Table 1. Summary of RNA sequencing results.

Controls 1 to 3 refer to water control replicates, inoculated 1 to 3 to replicate plants inoculated with P. cactorum 407; each replicate represents roots collected from one individual plant.

	Control1	Control2	Control3	Inoculated1	Inoculated2	Inoculated3
Raw reads	47 362 397	53 857 982	52 650 989	51 095 961	54 281 780	48 268 982
Filtered reads	44 737 172	50 780 701	49 622 232	48 143 355	51 128 038	45 564 435
(% of all reads)	94.46	94.29	94.25	94.22	94.19	94.4
Uniquely mapped reads	41 431 462	45 406 557	45 624 736	36 599 168	36 557 345	39 548 772
(% of filtered reads)	92.61	89.42	91.94	76.02	71.5	86.8
Reads assigned to annotated genes	34 082 834	33 195 110	37 515 085	31 698 158	31 582 432	33 963 737
(% of filtered reads)	76.18	65.37	75.6	65.84	61.77	74.54