Table 1.
LncRNAs interacting with RNA binding proteins.
| Tracking_id | Locus | Length | lncRNA | Biotype | No. of Interacted RBP | RBP |
|---|---|---|---|---|---|---|
| ENSG00000188206 | 1:244840637-244846903 | 6267 | HNRNPU-AS1 | antisense | 31 | HuR,PTB,IGF2BP1,IGF2BP2,IGF2BP3,PUM2,QKI,TNRC6,eIF4AIII,DGCR8,FMRP,FXR1,FXR2,FUS,LIN28A,LIN28B,LIN28,MOV10,ALKBH5,C22ORF28,CAPRIN1,ZC3H7B,EWSR1,FUS-mutant,TAF15,SFRS1,U2AF65,TIA1,TIAL1,hnRNPC,UPF1, |
| ENSG00000255717 | 11:62851987-62855914 | 3928 | SNHG1 | processed_transcript | 31 | TIAL1,hnRNPC,DGCR8,SFRS1,TIA1,ALKBH5,HuR,PTB,IGF2BP3,EWSR1,TDP43,FUS,ZC3H7B,FUS-mutant,U2AF65,QKI,MOV10,CAPRIN1,IGF2BP1,IGF2BP2,TNRC6,eIF4AIII,LIN28B,C22ORF28,UPF1,FMRP,FXR2,C17ORF85,TAF15,LIN28A,LIN28, |
| ENSG00000260032 | 20:36045621-36050960 | 5340 | LINC00657 | lincRNA | 31 | HuR,PTB,IGF2BP1,IGF2BP2,IGF2BP3,PUM2,QKI,TNRC6,eIF4AIII,DGCR8,FMRP,FXR1,FXR2,FUS,LIN28A,LIN28B,MOV10,C17ORF85,C22ORF28,CAPRIN1,ZC3H7B,EWSR1,FUS-mutant,TAF15,SFRS1,U2AF65,TIA1,TIAL1,hnRNPC,UPF1,TDP43, |
| ENSG00000229807 | X:73820650-73852753 | 32,104 | XIST | lincRNA | 29 | TNRC6,eIF4AIII,DGCR8,C22ORF28,TIA1,FMRP,FXR1,LIN28A,LIN28,C17ORF85,CAPRIN1,ZC3H7B,IGF2BP1,IGF2BP2,IGF2BP3,PUM2,FXR2,MOV10,ALKBH5,EWSR1,SFRS1,FUS,LIN28B,FUS-mutant,TIAL1,UPF1,TDP43,HuR,TAF15, |
| ENSG00000247556 | 15:41283989-41309737 | 25,749 | OIP5-AS1 | processed_transcript | 29 | HuR,PTB,IGF2BP1,IGF2BP2,IGF2BP3,PUM2,TNRC6,eIF4AIII,DGCR8,FMRP,FXR1,FXR2,FUS,LIN28A,LIN28B,LIN28,MOV10,CAPRIN1,ZC3H7B,EWSR1,FUS-mutant,TAF15,SFRS1,U2AF65,TIA1,TIAL1,hnRNPC,UPF1,TDP43, |
| ENSG00000163597 | 17:76557765-76565348 | 7584 | SNHG16 | processed_transcript | 27 | PTB,IGF2BP1,IGF2BP2,IGF2BP3,QKI,eIF4AIII,DGCR8,FMRP,FXR2,FUS,LIN28A,LIN28B,LIN28,MOV10,C17ORF85,C22ORF28,ZC3H7B,EWSR1,FUS-mutant,TAF15,SFRS1,U2AF65,TIA1,TIAL1,hnRNPC,UPF1,TDP43, |
| ENSG00000203875 | 6:85660949-85678736 | 17,788 | SNHG5 | processed_transcript | 27 | hnRNPC,TNRC6,TIAL1,UPF1,QKI,FMRP,ZC3H7B,PUM2,eIF4AIII,C17ORF85,EWSR1,TDP43,PTB,FXR2,FUS,SFRS1,DGCR8,CAPRIN1,HuR,IGF2BP1,IGF2BP2,C22ORF28,U2AF65,IGF2BP3,LIN28A,LIN28,LIN28B, |
| ENSG00000242125 | 1:28505979-28510892 | 4914 | SNHG3 | sense_intronic | 25 | HuR,PTB,IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,DGCR8,FMRP,FXR2,FUS,LIN28A,LIN28B,LIN28,C22ORF28,ZC3H7B,EWSR1,FUS-mutant,TAF15,SFRS1,U2AF65,TIA1,TIAL1,hnRNPC,UPF1,TDP43, |
| ENSG00000245532 | 11:65422773-65445540 | 22,768 | NEAT1 | lincRNA | 25 | TNRC6,C22ORF28,eIF4AIII,TDP43,FMRP,TAF15,TIA1,DGCR8,FUS,ZC3H7B,FUS-mutant,UPF1,IGF2BP3,QKI,ALKBH5,EWSR1,hnRNPC,PTB,IGF2BP1,SFRS1,IGF2BP2,TIAL1,U2AF65,LIN28A,LIN28B, |
| ENSG00000245910 | 8:66921683-66926398 | 4716 | SNHG6 | processed_transcript | 24 | hnRNPC,C17ORF85,ZC3H7B,HuR,TNRC6,FUS,TIAL1,TDP43,PUM2,MOV10,U2AF65,TIA1,UPF1,IGF2BP2,IGF2BP3,eIF4AIII,CAPRIN1,IGF2BP1,LIN28B,DGCR8,LIN28A,LIN28,FMRP,C22ORF28, |
| ENSG00000245694 | 16:54918862-54929189 | 10,328 | CRNDE | lincRNA | 23 | HuR,PTB,IGF2BP1,IGF2BP2,IGF2BP3,TNRC6,eIF4AIII,DGCR8,FMRP,FXR2,FUS,LIN28A,LIN28B,LIN28,ZC3H7B,EWSR1,FUS-mutant,TAF15,U2AF65,TIA1,TIAL1,hnRNPC,UPF1, |
| ENSG00000233016 | 9:136721365-136728184 | 6820 | SNHG7 | antisense | 22 | hnRNPC,IGF2BP3,IGF2BP2,ZC3H7B,FMRP,EWSR1,U2AF65,HuR,DGCR8,FUS,C22ORF28,FUS-mutant,SFRS1,UPF1,TDP43,IGF2BP1,eIF4AIII,TAF15,ALKBH5,LIN28B,LIN28A,LIN28, |
| ENSG00000259001 | 14:20343047-20343685 | 639 | RPPH1 | antisense | 20 | HuR,PTB,TNRC6,eIF4AIII,DGCR8,FMRP,FXR2,FUS,LIN28A,LIN28B,ALKBH5,C17ORF85,C22ORF28,CAPRIN1,ZC3H7B,TAF15,U2AF65,TIAL1,UPF1,TDP43, |
| ENSG00000232956 | 7:44983022-44986961 | 3940 | SNHG15 | lincRNA | 20 | HuR,eIF4AIII,DGCR8,FMRP,FXR2,FUS,LIN28A,LIN28,C22ORF28,CAPRIN1,ZC3H7B,EWSR1,TAF15,SFRS1,U2AF65,TIA1,TIAL1,hnRNPC,UPF1,TDP43, |
| ENSG00000231607 | 13:49982551-50125720 | 143,170 | DLEU2 | antisense | 19 | TIAL1,hnRNPC,IGF2BP3,FUS,FUS-mutant,U2AF65,TIA1,IGF2BP1,FMRP,ZC3H7B,EWSR1,HuR,IGF2BP2,eIF4AIII,DGCR8,LIN28B,PUM2,UPF1,TAF15, |
| ENSG00000269893 | 4:118278708-118279823 | 1116 | SNHG8 | lincRNA | 19 | HuR,eIF4AIII,DGCR8,FMRP,FUS,LIN28A,LIN28,MOV10,C22ORF28,CAPRIN1,ZC3H7B,EWSR1,TAF15,SFRS1,U2AF65,TIA1,hnRNPC,UPF1,TDP43, |
| ENSG00000258441 | 14:21200078-21206900 | 6823 | LINC00641 | processed_transcript | 19 | PTB,IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,DGCR8,FMRP,FXR2,FUS,LIN28B,CAPRIN1,ZC3H7B,EWSR1,FUS-mutant,U2AF65,TIAL1,hnRNPC,UPF1,TDP43, |
| ENSG00000243960 | 1:111438637-111441364 | 2728 | RP11-552M11.4 | sense_overlapping | 19 | HuR,PTB,IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,FMRP,FUS,LIN28A,LIN28B,LIN28,ZC3H7B,FUS-mutant,U2AF65,TIA1,TIAL1,hnRNPC,UPF1,TDP43, |
| ENSG00000215417 | 13:91347819-91354579 | 6761 | MIR17HG | processed_transcript | 18 | SFRS1,TIA1,TIAL1,DGCR8,EWSR1,FUS,HuR,MOV10,PTB,FMRP,LIN28A,LIN28B,hnRNPC,UPF1,FXR1,U2AF65,eIF4AIII,ZC3H7B, |
| ENSG00000197989 | 1:28578537-28582983 | 4447 | SNHG12 | antisense | 18 | TDP43,DGCR8,TIAL1,EWSR1,FUS,SFRS1,C22ORF28,U2AF65,FMRP,C17ORF85,HuR,eIF4AIII,FXR2,UPF1,LIN28A,LIN28,hnRNPC,LIN28B, |
| ENSG00000226950 | 4:52712403-52720351 | 7949 | DANCR | processed_transcript | 18 | HuR,PTB,IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,DGCR8,FMRP,FUS,LIN28B,LIN28,CAPRIN1,FUS-mutant,TAF15,U2AF65,TIA1,TIAL1,UPF1, |
| ENSG00000177410 | 20:49278177-49295738 | 17,562 | ZFAS1 | antisense | 18 | HuR,IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,FMRP,FUS,LIN28A,LIN28,MOV10,C22ORF28,CAPRIN1,ZC3H7B,FUS-mutant,TAF15,SFRS1,U2AF65,UPF1, |
| ENSG00000276232 | 12:6510274-6510522 | 249 | SCARNA10 | sense_intronic | 18 | PTB,eIF4AIII,DGCR8,FMRP,FXR2,FUS,LIN28A,LIN28B,LIN28,C17ORF85,C22ORF28,ZC3H7B,EWSR1,U2AF65,TIAL1,hnRNPC,UPF1,TDP43, |
| ENSG00000170846 | 4:6673450-6676047 | 2598 | AC093323.3 | lincRNA | 17 | HuR,PTB,IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,DGCR8,FMRP,FUS,MOV10,CAPRIN1,ZC3H7B,U2AF65,TIA1,TIAL1,hnRNPC,UPF1, |
| ENSG00000179818 | 2:69962262-70088846 | 126,585 | PCBP1-AS1 | antisense | 16 | PTB,eIF4AIII,DGCR8,FMRP,FXR2,FUS,LIN28A,LIN28B,LIN28,SFRS1,U2AF65,TIA1,TIAL1,hnRNPC,UPF1,TDP43, |
| ENSG00000267575 | 19:27793462-27918863 | 125,402 | CTC-459F4.3 | processed_transcript | 16 | PTB,IGF2BP1,IGF2BP2,IGF2BP3,QKI,eIF4AIII,DGCR8,FMRP,FUS,LIN28A,C22ORF28,TAF15,U2AF65,TIAL1,hnRNPC,UPF1, |
| ENSG00000270066 | 1:109100192-109100619 | 428 | SCARNA2 | lincRNA | 15 | PTB,eIF4AIII,DGCR8,FMRP,FXR2,FUS,LIN28A,LIN28B,MOV10,C17ORF85,U2AF65,TIAL1,hnRNPC,UPF1,TDP43, |
| ENSG00000251022 | 4:82893008-82900960 | 7953 | THAP9-AS1 | antisense | 15 | IGF2BP1,PUM2,eIF4AIII,DGCR8,FUS,LIN28B,LIN28,CAPRIN1,FUS-mutant,TAF15,U2AF65,TIA1,TIAL1,hnRNPC,UPF1, |
| ENSG00000261553 | 13:75549772-75807120 | 257,349 | RP11-29G8.3 | processed_transcript | 15 | HuR,PTB,IGF2BP1,IGF2BP2,TNRC6,eIF4AIII,DGCR8,FMRP,FXR2,FUS,C22ORF28,SFRS1,U2AF65,hnRNPC,UPF1, |
| ENSG00000254911 | 11:93721512-93721865 | 354 | SCARNA9 | antisense | 14 | PTB,eIF4AIII,DGCR8,FMRP,FXR2,FUS,C17ORF85,ZC3H7B,EWSR1,FUS-mutant, TIAL1, hnRNPC, UPF1,TDP43, |
| ENSG00000260035 | 15:45200324-45200632 | 309 | CTD-2651B20.6 | sense_intronic | 14 | PTB,IGF2BP2,eIF4AIII,DGCR8,FMRP,LIN28A,LIN28B,LIN28,SFRS1,TIA1,TIAL1,hnRNPC,UPF1,TDP43, |
| ENSG00000230590 | X:73963954-74293574 | 329,621 | FTX | lincRNA | 14 | IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,DGCR8,FUS,ZC3H7B,SFRS1,U2AF65,TIA1,TIAL1,hnRNPC,UPF1,TDP43, |
| ENSG00000126005 | 20:35216461-35278131 | 61,671 | MMP24-AS1 | antisense | 13 | HuR,IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,DGCR8,FMRP,FUS,LIN28A,ZC3H7B,U2AF65,TIA1,UPF1, |
| ENSG00000267321 | 17:35568119-35574792 | 6674 | RP11-1094M14.11 | lincRNA | 13 | IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,FMRP,FUS,LIN28A,LIN28B,ZC3H7B,FUS-mutant,TAF15,U2AF65,UPF1, |
| ENSG00000226688 | 10:95753205-96090238 | 337,034 | ENTPD1-AS1 | antisense | 12 | HuR,PTB,eIF4AIII,FMRP,FUS,LIN28B,EWSR1,U2AF65,TIA1,TIAL1,hnRNPC,UPF1, |
| ENSG00000264112 | 17:57989038-57994850 | 5813 | RP11-159D12.2 | lincRNA | 12 | HuR,PTB,IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,DGCR8,FUS,ZC3H7B,TAF15,U2AF65,hnRNPC, |
| ENSG00000233429 | 7:27095646-27100265 | 4620 | HOTAIRM1 | antisense | 12 | PTB,IGF2BP1,eIF4AIII,DGCR8,FUS,LIN28A,CAPRIN1,SFRS1,U2AF65,TIAL1,hnRNPC,UPF1, |
| ENSG00000234327 | 17:5111467-5115004 | 3538 | AC012146.7 | processed_transcript | 12 | IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,DGCR8,LIN28B,EWSR1,FUS-mutant,TAF15,SFRS1,U2AF65,TIAL1, |
| ENSG00000223546 | X:102769160-102885406 | 116,247 | LINC00630 | lincRNA | 11 | IGF2BP2,IGF2BP3,eIF4AIII,DGCR8,FMRP,FUS,LIN28B,U2AF65,TIAL1,hnRNPC,UPF1, |
| ENSG00000186594 | 17:1711492-1717174 | 5683 | MIR22HG | lincRNA | 11 | HuR,PTB,eIF4AIII,DGCR8,FMRP,FUS,LIN28A,LIN28B,ZC3H7B,U2AF65,UPF1, |
| ENSG00000247828 | 5:88268894-88436685 | 167,792 | TMEM161B-AS1 | antisense | 10 | PTB,IGF2BP3,eIF4AIII,DGCR8,FUS,SFRS1,U2AF65,TIAL1,hnRNPC,UPF1, |
| ENSG00000247092 | 14:95532296-95534872 | 2577 | SNHG10 | antisense | 10 | U2AF65,hnRNPC,FUS,LIN28B,eIF4AIII,ZC3H7B,UPF1,HuR,TAF15,FMRP, |
| ENSG00000142396 | 19:58305318-58315663 | 10,346 | ERVK3-1 | processed_transcript | 10 | PTB,eIF4AIII,DGCR8,FMRP,FUS,LIN28A,LIN28B,U2AF65,TIAL1,UPF1, |
| ENSG00000261889 | 16:3156735-3157483 | 749 | RP11-473M20.16 | lincRNA | 10 | eIF4AIII,DGCR8,FMRP,FXR2,LIN28A,LIN28B,EWSR1,TIA1,TIAL1,UPF1, |
| ENSG00000196295 | 7:30516308-30594809 | 78,502 | AC005154.6 | processed_transcript | 10 | PTB,eIF4AIII,DGCR8,FUS,LIN28B,EWSR1,U2AF65,TIAL1,hnRNPC,UPF1, |
| ENSG00000261061 | 16:81030769-81031485 | 717 | RP11-303E16.2 | sense_intronic | 10 | HuR,PTB,IGF2BP1,IGF2BP2,IGF2BP3,TNRC6,eIF4AIII,DGCR8,U2AF65,UPF1, |
| ENSG00000255198 | 16:1964958-1965509 | 552 | SNHG9 | lincRNA | 9 | CAPRIN1,U2AF65,FUS,HuR,DGCR8,FMRP,UPF1,eIF4AIII,C22ORF28, |
| ENSG00000231312 | 2:39436636-39665343 | 228,708 | AC007246.3 | antisense | 9 | PTB,eIF4AIII,DGCR8,FUS,U2AF65,TIA1,TIAL1,UPF1,TDP43, |
| ENSG00000258297 | 11:66666035-66668374 | 2340 | RP11-658F2.8 | antisense | 8 | IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,FUS,ZC3H7B,U2AF65,UPF1, |
| ENSG00000234608 | 12:111839763-111842902 | 3140 | MAPKAPK5-AS1 | lincRNA | 8 | IGF2BP1,IGF2BP3,eIF4AIII,FMRP,FUS,LIN28A,U2AF65,UPF1, |
| ENSG00000230844 | X:46545492-46548408 | 2917 | ZNF674-AS1 | lincRNA | 8 | HuR,PTB,eIF4AIII,FMRP,LIN28B,U2AF65,hnRNPC,UPF1, |
| ENSG00000258486 | 14:49586578-49586878 | 301 | RN7SL1 | known_ncrna | 8 | DGCR8,FMRP,FXR2,LIN28A,LIN28B,MOV10,hnRNPC,TDP43, |
| ENSG00000228549 | 1:16870944-16874092 | 3149 | RP11-108M9.3 | lincRNA | 8 | PTB,DGCR8,LIN28A,U2AF65,TIA1,TIAL1,hnRNPC,UPF1, |
| ENSG00000224078 | 15:24978582-25056565 | 77,984 | SNHG14 | processed_transcript | 8 | PTB,eIF4AIII,DGCR8,FUS,LIN28,TIAL1,UPF1,TDP43, |
| ENSG00000229152 | 13:110894638-110899172 | 4535 | ANKRD10-IT1 | sense_intronic | 7 | IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,FUS,U2AF65,hnRNPC, |
| ENSG00000253552 | 7:27107776-27134302 | 26,527 | HOXA-AS2 | antisense | 7 | eIF4AIII,DGCR8,FMRP,FUS,U2AF65,UPF1,TDP43, |
| ENSG00000240498 | 9:21994777-22121097 | 126,321 | CDKN2B-AS1 | antisense | 7 | PTB,eIF4AIII,DGCR8,FUS,LIN28A,U2AF65,UPF1, |
| ENSG00000261526 | 19:1874870-1876169 | 1300 | CTB-31O20.2 | lincRNA | 7 | IGF2BP1,eIF4AIII,DGCR8,FMRP,FUS,U2AF65,hnRNPC, |
| ENSG00000222041 | 2:87455367-87606805 | 151,439 | LINC00152 | lincRNA | 7 | PTB,eIF4AIII,FUS,U2AF65,TIA1,TIAL1,UPF1, |
| ENSG00000236088 | 17:13756477-14069495 | 313,019 | COX10-AS1 | processed_transcript | 6 | PTB,eIF4AIII,U2AF65,TIAL1,hnRNPC,UPF1, |
| ENSG00000269825 | 19:52650436-52653284 | 2849 | CTD-3099C6.9 | sense_intronic | 6 | PTB,IGF2BP2,eIF4AIII,FMRP,LIN28B,UPF1, |
| ENSG00000268388 | 16:86474528-86509099 | 34,572 | FENDRR | lincRNA | 6 | PTB,eIF4AIII,DGCR8,FUS,hnRNPC,UPF1, |
| ENSG00000236824 | 2:47331059-47344517 | 13,459 | BCYRN1 | lincRNA | 6 | eIF4AIII,FUS,U2AF65,TIAL1,UPF1,TDP43, |
| ENSG00000255248 | 11:122028354-122116323 | 87,970 | RP11-166D19.1 | sense_overlapping | 6 | eIF4AIII,DGCR8,FUS,U2AF65,hnRNPC,UPF1, |
| ENSG00000255090 | 11:122155421-122422871 | 267,451 | RP11-820L6.1 | lincRNA | 6 | eIF4AIII,U2AF65,TIA1,TIAL1,hnRNPC,UPF1, |
| ENSG00000233461 | 1:231522387-231528556 | 6170 | RP11-295G20.2 | antisense | 5 | IGF2BP1,IGF2BP2,IGF2BP3,eIF4AIII,UPF1, |
| ENSG00000255135 | 11:76441337-76444656 | 3320 | RP11-111M22.3 | lincRNA | 5 | eIF4AIII,LIN28,U2AF65,TIAL1,UPF1, |
| ENSG00000261094 | 9:122937622-122940333 | 2712 | RP11-355O1.11 | sense_overlapping | 5 | PTB,eIF4AIII,U2AF65,hnRNPC,UPF1, |
| ENSG00000232442 | 20:63627226-63628824 | 1599 | CTD-3184A7.4 | antisense | 5 | eIF4AIII,DGCR8,FUS,U2AF65,UPF1, |
| ENSG00000233421 | 1:16533885-16536172 | 2288 | RP5-875O13.1 | lincRNA | 5 | eIF4AIII,DGCR8,FMRP,LIN28,U2AF65, |
| ENSG00000214548 | 14:100779409-100861031 | 81,623 | MEG3 | lincRNA | 5 | PTB,eIF4AIII,DGCR8,FUS,TDP43, |
| ENSG00000247137 | 11:83184490-83193794 | 9305 | RP11-727A23.5 | processed_transcript | 5 | eIF4AIII,DGCR8,U2AF65,TIAL1,hnRNPC, |
| ENSG00000248690 | 8:121639292-121644693 | 5402 | HAS2-AS1 | antisense | 4 | PTB,eIF4AIII,FUS,UPF1, |
| ENSG00000237491 | 1:778769-810060 | 31,292 | RP11-206L10.9 | lincRNA | 4 | eIF4AIII,FUS,SFRS1,U2AF65, |
| ENSG00000224505 | 17:45150399-45161510 | 11,112 | AC002117.1 | antisense | 4 | eIF4AIII,FUS,U2AF65,UPF1, |
| ENSG00000269926 | 10:72274914-72275980 | 1067 | RP11-442H21.2 | antisense | 3 | eIF4AIII,DGCR8,UPF1, |
| ENSG00000256813 | 11:60841805-60851081 | 9277 | RP11-804A23.4 | antisense | 3 | DGCR8,FUS,UPF1, |
| ENSG00000233101 | 17:48549629-48606414 | 56,786 | HOXB-AS3 | antisense | 3 | PTB,LIN28A,LIN28B, |
| ENSG00000269243 | 19:16123660-16139892 | 16,233 | CTD-2231E14.8 | antisense | 3 | eIF4AIII,FUS,UPF1, |
| ENSG00000260708 | 22:46761893-46762563 | 671 | CTA-29F11.1 | antisense | 3 | eIF4AIII,FUS,U2AF65, |
| ENSG00000271335 | 10:35314551-35336401 | 21,851 | RP11-324I22.4 | antisense | 3 | eIF4AIII,FUS,UPF1, |
| ENSG00000261054 | 15:99128831-99131806 | 2976 | RP11-6O2.4 | antisense | 3 | HuR,eIF4AIII,FUS, |
| ENSG00000266490 | 17:30792371-30792833 | 463 | CTD-2349P21.9 | lincRNA | 3 | eIF4AIII,FUS,UPF1, |
| ENSG00000270195 | 4:1712820-1713622 | 803 | RP11-572O17.1 | lincRNA | 3 | eIF4AIII,FUS,U2AF65, |
| ENSG00000219665 | 19:11987616-12046275 | 58,660 | CTD-2006C1.2 | processed_transcript | 3 | IGF2BP1,IGF2BP2,eIF4AIII, |
| ENSG00000223343 | 3:48985048-48989988 | 4941 | RP13-131K19.2 | antisense | 3 | eIF4AIII,FUS,UPF1, |
| ENSG00000261220 | 8:133573182-133573861 | 680 | RP11-629O1.2 | lincRNA | 3 | PTB,eIF4AIII,UPF1, |
| ENSG00000269051 | 19:53197110-53211015 | 13,906 | CTD-2245F17.3 | lincRNA | 3 | eIF4AIII,FUS,SFRS1, |
| ENSG00000225511 | 9:92141297-92160114 | 18,818 | LINC00475 | lincRNA | 3 | PTB,eIF4AIII,FUS, |
| ENSG00000245573 | 11:27506837-27698174 | 191,338 | BDNF-AS | antisense | 3 | eIF4AIII,FUS,UPF1, |
| ENSG00000224959 | 2:111491942-111494811 | 2870 | AC017002.2 | lincRNA | 3 | eIF4AIII,FUS,TIAL1, |
| ENSG00000249669 | 5:149406688-149428678 | 21,991 | MIR143HG | lincRNA | 3 | FUS,TIAL1,hnRNPC, |
| ENSG00000230606 | 2:97416164-97433527 | 17,364 | AC159540.1 | lincRNA | 2 | eIF4AIII,FUS, |
| ENSG00000258399 | 14:100894769-100935999 | 41,231 | MEG8 | lincRNA | 2 | TDP43,FUS, |
| ENSG00000256940 | 11:64245963-64248217 | 2255 | RP11-783K16.5 | antisense | 2 | eIF4AIII,UPF1, |
| ENSG00000269604 | 19:4791744-4795559 | 3816 | AC005523.2 | antisense | 2 | FUS,UPF1, |
| ENSG00000267776 | 19:56376703-56377284 | 582 | AC006116.24 | sense_intronic | 2 | FUS,EWSR1, |
| ENSG00000267458 | 19:12944117-12944487 | 371 | CTC-425F1.4 | antisense | 2 | FUS,UPF1, |
| ENSG00000257553 | 12:56104613-56113905 | 9293 | RP11-603J24.17 | antisense | 2 | eIF4AIII,UPF1, |
| ENSG00000238045 | 16:29808635-29821252 | 12,618 | AC009133.12 | antisense | 2 | eIF4AIII,U2AF65, |
| ENSG00000259952 | 16:29806495-29807732 | 1238 | AC009133.15 | antisense | 2 | eIF4AIII,LIN28B, |
| ENSG00000228109 | 3:196999459-197004744 | 5286 | MFI2-AS1 | antisense | 2 | eIF4AIII,U2AF65, |
| ENSG00000261822 | 15:42567030-42569994 | 2965 | RP11-265N6.2 | antisense | 2 | eIF4AIII,UPF1, |
| ENSG00000260934 | 16:19501688-19502286 | 599 | CTA-363E6.7 | antisense | 2 | eIF4AIII,FUS, |
| ENSG00000240801 | 11:2129120-2129964 | 845 | AC132217.4 | 3prime_overlapping_ncrna | 2 | eIF4AIII,FUS, |
| ENSG00000227896 | 10:86521944-86525101 | 3158 | RP11-77P6.2 | antisense | 2 | eIF4AIII,FUS, |
| ENSG00000254452 | 11:66276778-66277492 | 715 | RP11-867G23.4 | antisense | 2 | FUS,UPF1, |
| ENSG00000259357 | 1:150965244-150966256 | 1013 | RP11-316M1.12 | antisense | 2 | eIF4AIII,UPF1, |
| ENSG00000269968 | 12:6537793-6538370 | 578 | RP5-940J5.9 | antisense | 2 | eIF4AIII,UPF1, |
| ENSG00000260923 | 16:90185996-90222678 | 36,683 | AC137934.1 | lincRNA | 2 | eIF4AIII,FUS, |
| ENSG00000269439 | 19:17488989-17511889 | 22,901 | CTD-3131K8.2 | lincRNA | 2 | eIF4AIII,FUS, |
| ENSG00000261602 | 16:69709873-69710583 | 711 | CTD-2033A16.1 | antisense | 2 | eIF4AIII,UPF1, |
| ENSG00000234961 | 10:17233324-17234833 | 1510 | RP11-124N14.3 | antisense | 2 | FUS,UPF1, |
| ENSG00000258377 | 14:49620814-49623480 | 2667 | RP11-649E7.5 | antisense | 2 | FUS,UPF1, |
| ENSG00000249786 | 3:15436170-15451602 | 15,433 | EAF1-AS1 | antisense | 2 | eIF4AIII,UPF1, |
| ENSG00000263424 | 18:67506588-67514030 | 7443 | CTD-2541J13.2 | antisense | 2 | DGCR8,UPF1, |
| ENSG00000267257 | 18:58535414-58538552 | 3139 | RP11-1151B14.4 | antisense | 2 | DGCR8,FUS, |
| ENSG00000255864 | 12:24213255-24562590 | 349,336 | RP11-444D3.1 | lincRNA | 2 | eIF4AIII,FUS, |
| ENSG00000227112 | 6:128505124-128506276 | 1153 | RP1-86D1.4 | antisense | 1 | FUS, |
| ENSG00000258908 | 14:20474788-20477089 | 2302 | RP11-203M5.8 | lincRNA | 1 | UPF1, |
| ENSG00000263065 | 16:15741150-15741791 | 642 | AF001548.6 | antisense | 1 | FUS, |
| ENSG00000249835 | 5:83541476-83581320 | 39,845 | VCAN-AS1 | antisense | 1 | eIF4AIII, |
| ENSG00000268309 | 19:16551772-16552328 | 557 | CTD-3222D19.11 | antisense | 1 | UPF1, |
| ENSG00000236498 | 2:61868431-61886082 | 17,652 | AC107081.5 | antisense | 1 | UPF1, |
| ENSG00000264558 | 17:47682416-47682683 | 268 | RP11-138C9.1 | antisense | 1 | FUS, |
| ENSG00000250186 | 17:49404080-49405197 | 1118 | RP11-1079K10.4 | antisense | 1 | UPF1, |
| ENSG00000253174 | 8:41540380-41545044 | 4665 | RP11-360L9.7 | antisense | 1 | UPF1, |
| ENSG00000254682 | 11:71448673-71452157 | 3485 | RP11-660L16.2 | antisense | 1 | U2AF65, |
| ENSG00000234883 | 21:25561908-25575168 | 13,261 | MIR155HG | lincRNA | 1 | PTB, |
| ENSG00000267886 | 19:23075200-23100361 | 25,162 | CTD-2291D10.4 | lincRNA | 1 | DGCR8, |
| ENSG00000269292 | 19:46609276-46610779 | 1504 | CTB-12A17.3 | antisense | 1 | UPF1, |
| ENSG00000268854 | 19:50480118-50483351 | 3234 | CTD-2545M3.2 | antisense | 1 | UPF1, |
| ENSG00000262831 | 17:81843164-81843958 | 795 | RP11-498C9.2 | antisense | 1 | UPF1, |
| ENSG00000267512 | 19:13139616-13141147 | 1532 | CTC-250I14.3 | antisense | 1 | UPF1, |
| ENSG00000203279 | 9:97200474-97238700 | 38,227 | RP11-498P14.5 | lincRNA | 1 | eIF4AIII, |
| ENSG00000232527 | 1:144227029-144250288 | 23,260 | RP11-14N7.2 | lincRNA | 1 | eIF4AIII, |
| ENSG00000257181 | 12:68841287-68843237 | 1951 | RP11-611O2.5 | antisense | 1 | UPF1, |
| ENSG00000236886 | 2:216694463-216994079 | 299,617 | AC007563.5 | antisense | 1 | FUS, |
| ENSG00000259627 | 15:63070024-63071911 | 1888 | RP11-244F12.2 | antisense | 1 | DGCR8, |
| ENSG00000260349 | 16:9105833-9107174 | 1342 | RP11-473I1.5 | antisense | 1 | UPF1, |
| ENSG00000265784 | 17:38918800-38921769 | 2970 | RP1-56K13.3 | antisense | 1 | UPF1, |
| ENSG00000261295 | X:100673329-100673981 | 653 | RP11-524D16__A.3 | antisense | 1 | eIF4AIII, |
| ENSG00000236581 | 13:33271378-33281334 | 9957 | STARD13-AS | processed_transcript | 1 | eIF4AIII, |
| ENSG00000279753 | 19:1038726-1039064 | 339 | AC011558.5 | TEC | 1 | UPF1, |
| ENSG00000259498 | 15:63046033-63049387 | 3355 | RP11-244F12.3 | antisense | 1 | FUS, |
| ENSG00000227248 | 13:107788341-107835451 | 47,111 | FAM155A-IT1 | sense_intronic | 1 | FUS, |