Table 2.
RNA and protein expression of RNA binding proteins of lncRNAs identified in this study.
| RBP | Number of lncRNA interacted with | The list of lncRNAs that interact with RBP |
RNA seq Reads (FPKM) |
Fold change at mRNA level |
Fold-changes of RBP at protein level |
||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mock | Ad2-6 hpi | Ad2-12 hpi | Ad2-24 hpi | Ad2-36 hpi | Ad2-24 hpi/M | Ad2-36 hpi/M | Ad2-24 hpi/M | Ad2-36 hpi/M | |||
| eIF4AIII | 112 | NEAT1,DLEU2,SNHG10,SNHG1,SNHG5,SNHG6,SNHG12,XIST,SNHG7,MIR17HG,SNHG9,CTD-2033A16.1,RP11-552M11.4,BCYRN1,CTA-363E6.7,ENTPD1-AS1,RP11-324I22.4,EAF1-AS1,RP11-524D16__A.3,AC012146.7,RP11-14N7.2,CTD-2349P21.9,AC007246.3,ERVK3-1,RP11-442H21.2,SNHG3,RP11-727A23.5,RP11-166D19.1,AC002117.1,AC017002.2,RP11-603J24.17,RP11-629O1.2,RP11-295G20.2,RP11-444D3.1,HNRNPU-AS1,AC009133.15,RP11-783K16.5,SNORA71A,RP11-111M22.3,CTA-29F11.1,RP11-29G8.3,TMEM161B-AS1,CTD-2231E14.8,HAS2-AS1,RP11-303E16.2,RP11-820L6.1,SNHG8,CTD-2245F17.3,LINC00641,RP11-473M20.16,SNHG15,MIR22HG,FTX,HOXA-AS2,SNHG14,AC132217.4,LINC00152,AC093323.3,STARD13-AS,MFI2-AS1,CRNDE,CTC-459F4.3,LINC00657,MEG3,RP11-6O2.4,RP11-206L10.9,VCAN-AS1,ZFAS1,MMP24-AS1,THAP9-AS1,RP11-77P6.2,RP5-940J5.9,CTD-2651B20.6,RP11-159D12.2,RP11-316M1.12,ANKRD10-IT1,CDKN2B-AS1,CTD-3099C6.9,RP11-1094M14.11,RPPH1,RP11-572O17.1,CTD-3131K8.2,RP5-875O13.1,RP11-498P14.5,DANCR,FENDRR,RP11-355O1.11,AC009133.12,RP11-265N6.2,LINC00630,CTB-31O20.2,BDNF-AS,CTD-3184A7.4,SCARNA10,SCARNA9,AC159540.1,SCARNA2,HOTAIRM1,ZNF674-AS1,OIP5-AS1,SNHG16,LINC00475,RP11-658F2.8,RP13-131K19.2,AC137934.1,RNU4ATAC,RNU11,MAPKAPK5-AS1,PCBP1-AS1,COX10-AS1,AC005154.6,CTD-2006C1.2, | 21.5 | 24.3 | 29.2 | 49.7 | 34.6 | 2.3 | 1.6 | 1,3a | 1.6 |
| UPF1 | 104 | SNHG5,NEAT1,SNHG9,SNHG1,MIR17HG,SNHG6,SNHG10,SNHG7,SNHG12,DLEU2,XIST,CTD-3222D19.11,CTD-2033A16.1,RP11-552M11.4,RP11-498C9.2,BCYRN1,CTB-12A17.3,ENTPD1-AS1,RP11-324I22.4,EAF1-AS1,CTD-2349P21.9,RP11-611O2.5,AC007246.3,ERVK3-1,RP11-442H21.2,SNHG3,RP11-473I1.5,RP11-166D19.1,AC002117.1,RP11-804A23.4,RP11-603J24.17,RP11-629O1.2,RP11-295G20.2,RNU6-2,HNRNPU-AS1,RP11-783K16.5,CTD-2545M3.2,SNORA71A,RP11-111M22.3,AC011558.5,RP11-29G8.3,RP11-124N14.3,TMEM161B-AS1,CTD-2231E14.8,HAS2-AS1,RP11-303E16.2,RP11-820L6.1,SNHG8,RP11-1079K10.4,LINC00641,RP11-473M20.16,SNHG15,MIR22HG,FTX,HOXA-AS2,SNHG14,AC093323.3,LINC00152,RP1-56K13.3,CTC-425F1.4,CRNDE,RP11-108M9.3,CTC-459F4.3,LINC00657,RP11-203M5.8,RP11-649E7.5,AC107081.5,ZFAS1,MMP24-AS1,THAP9-AS1,CTD-2541J13.2,RP11-867G23.4,RP5-940J5.9,RP11-360L9.7,CTD-2651B20.6,RP11-316M1.12,CDKN2B-AS1,CTD-3099C6.9,CTC-250I14.3,RP11-1094M14.11,RPPH1,DANCR,FENDRR,RP11-355O1.11,RP11-265N6.2,LINC00630,BDNF-AS,CTD-3184A7.4,SCARNA10,SCARNA9,SCARNA2,HOTAIRM1,ZNF674-AS1,OIP5-AS1,SNHG16,RP11-658F2.8,RP13-131K19.2,RNU4ATAC,AC005523.2,RNU11,MAPKAPK5-AS1,PCBP1-AS1,COX10-AS1,AC005154.6, | 11.6 | 11.8 | 12.9 | 24.5 | 24.1 | 2.1 | 2.1 | 1.5 | 1.9 |
| FUS | 96 | SNHG12,DLEU2,SNHG1,MIR17HG,SNHG6,SNHG10,SNHG9,NEAT1,SNHG7,SNHG5,MEG8,XIST,RP11-552M11.4,BCYRN1,CTA-363E6.7,AC007563.5,RP11-138C9.1,ENTPD1-AS1,RP11-324I22.4,CTD-2349P21.9,AC007246.3,ERVK3-1,SNHG3,RP11-166D19.1,RP1-86D1.4,AC002117.1,RP11-804A23.4,AC017002.2,RP11-444D3.1,HNRNPU-AS1,CTA-29F11.1,RP11-29G8.3,RP11-124N14.3,TMEM161B-AS1,CTD-2231E14.8,HAS2-AS1,SNHG8,CTD-2245F17.3,LINC00641,RP11-244F12.3,SNHG15,MIR22HG,FTX,AF001548.6,HOXA-AS2,SNHG14,AC132217.4,AC093323.3,LINC00152,CTC-425F1.4,MIR143HG,CRNDE,CTC-459F4.3,LINC00657,MEG3,RP11-6O2.4,RP11-649E7.5,FAM155A-IT1,RP11-206L10.9,ZFAS1,MMP24-AS1,THAP9-AS1,RP11-77P6.2,RP11-867G23.4,RP11-1151B14.4,RP11-159D12.2,ANKRD10-IT1,CDKN2B-AS1,RP11-1094M14.11,RPPH1,RP11-572O17.1,CTD-3131K8.2,DANCR,FENDRR,LINC00630,CTB-31O20.2,BDNF-AS,AC006116.24,CTD-3184A7.4,SCARNA10,SCARNA9,AC159540.1,SCARNA2,HOTAIRM1,OIP5-AS1,SNHG16,LINC00475,RP11-658F2.8,RP13-131K19.2,AC137934.1,RNU4ATAC,AC005523.2,RNU11,MAPKAPK5-AS1,PCBP1-AS1,AC005154.6, | 5.3 | 3.8 | 5.7 | 8.4 | 9.3 | 1.6 | 1.8 | 1.5 | 1.5 |
| U2AF65 | 72 | SNHG10,SNHG9,DLEU2,SNHG12,SNHG1,SNHG7,SNHG6,MIR17HG,NEAT1,SNHG5,RP11-552M11.4,BCYRN1,ENTPD1-AS1,AC012146.7,AC007246.3,ERVK3-1,SNHG3,RP11-727A23.5,RP11-166D19.1,AC002117.1,RNU6-2,HNRNPU-AS1,RP11-111M22.3,CTA-29F11.1,RP11-29G8.3,TMEM161B-AS1,RP11-303E16.2,RP11-820L6.1,SNHG8,RP11-660L16.2,LINC00641,SNHG15,MIR22HG,FTX,HOXA-AS2,AC093323.3,LINC00152,MFI2-AS1,CRNDE,RP11-108M9.3,CTC-459F4.3,LINC00657,RP11-206L10.9,ZFAS1,MMP24-AS1,THAP9-AS1,RP11-159D12.2,ANKRD10-IT1,CDKN2B-AS1,RP11-1094M14.11,RPPH1,RP11-572O17.1,RP5-875O13.1,DANCR,RP11-355O1.11,AC009133.12,LINC00630,CTB-31O20.2,CTD-3184A7.4,SCARNA10,SCARNA2,HOTAIRM1,ZNF674-AS1,OIP5-AS1,SNHG16,RP11-658F2.8,RNU4ATAC,RNU11,MAPKAPK5-AS1,PCBP1-AS1,COX10-AS1,AC005154.6, | – | – | – | – | – | – | – | – | – |
| DGCR8 | 64 | SNHG12,SNHG1,MIR17HG,NEAT1,SNHG9,DLEU2,SNHG7,XIST,SNHG5,SNHG6,RN7SL1,AC012146.7,AC007246.3,ERVK3-1,RP11-442H21.2,SNHG3,RP11-727A23.5,RP11-166D19.1,RP11-804A23.4,HNRNPU-AS1,SNORA71A,RP11-29G8.3,TMEM161B-AS1,RP11-303E16.2,SNHG8,LINC00641,RP11-473M20.16,SNHG15,MIR22HG,FTX,HOXA-AS2,SNHG14,AC093323.3,RP11-244F12.2,CRNDE,RP11-108M9.3,CTC-459F4.3,LINC00657,MEG3,MMP24-AS1,THAP9-AS1,CTD-2541J13.2,RP11-1151B14.4,CTD-2651B20.6,RP11-159D12.2,CDKN2B-AS1,RPPH1,RP5-875O13.1,DANCR,FENDRR,LINC00630,CTB-31O20.2,CTD-3184A7.4,SCARNA10,SCARNA9,SCARNA2,HOTAIRM1,OIP5-AS1,SNHG16,CTD-2291D10.4,RNU4ATAC,RNU11,PCBP1-AS1,AC005154.6, | 9.4 | 11.1 | 10.5 | 8.9 | 2.7 | −1.1 | −3.5 | – | – |
| hnRNPC | 50 | SNHG1,SNHG5,DLEU2,SNHG6,SNHG7,SNHG10,NEAT1,MIR17HG,SNHG12,RP11-552M11.4,ENTPD1-AS1,RN7SL1,SNHG3,RP11-727A23.5,RP11-166D19.1,RNU6-2,HNRNPU-AS1,RP11-29G8.3,TMEM161B-AS1,RP11-820L6.1,SNHG8,LINC00641,SNHG15,FTX,AC093323.3,MIR143HG,CRNDE,RP11-108M9.3,CTC-459F4.3,LINC00657,THAP9-AS1,CTD-2651B20.6,RP11-159D12.2,ANKRD10-IT1,FENDRR,RP11-355O1.11,LINC00630,CTB-31O20.2,SCARNA10,SCARNA9,SCARNA2,HOTAIRM1,ZNF674-AS1,OIP5-AS1,SNHG16,RNU4ATAC,RNU11,PCBP1-AS1,COX10-AS1,AC005154.6, | 157.8 | 169.3 | 181.6 | 289.6 | 474.8 | 1.8 | 3 | 1.1 | 1.1 |
| FMRP | 49 | NEAT1,DLEU2,SNHG9,SNHG12,SNHG5,SNHG7,MIR17HG,SNHG1,XIST,SNHG6,SNHG10,RP11-552M11.4,ENTPD1-AS1,RN7SL1,ERVK3-1,SNHG3,HNRNPU-AS1,SNORA71A,RP11-29G8.3,SNHG8,LINC00641,RP11-473M20.16,SNHG15,MIR22HG,HOXA-AS2,AC093323.3,CRNDE,CTC-459F4.3,LINC00657,ZFAS1,MMP24-AS1,CTD-2651B20.6,CTD-3099C6.9,RP11-1094M14.11,RPPH1,RP5-875O13.1,DANCR,LINC00630,CTB-31O20.2,SCARNA10,SCARNA9,SCARNA2,ZNF674-AS1,OIP5-AS1,SNHG16,RNU4ATAC,RNU11,MAPKAPK5-AS1,PCBP1-AS1, | – | – | – | – | – | – | – | –b | – |
| TIAL1 | 48 | SNHG1,DLEU2,MIR17HG,SNHG12,SNHG5,SNHG6,NEAT1,XIST,RP11-552M11.4,BCYRN1,ENTPD1-AS1,AC012146.7,AC007246.3,ERVK3-1,SNHG3,RP11-727A23.5,AC017002.2,HNRNPU-AS1,RP11-111M22.3,TMEM161B-AS1,RP11-820L6.1,LINC00641,RP11-473M20.16,SNHG15,FTX,SNHG14,AC093323.3,LINC00152,MIR143HG,CRNDE,RP11-108M9.3,CTC-459F4.3,LINC00657,THAP9-AS1,CTD-2651B20.6,RPPH1,DANCR,LINC00630,SCARNA10,SCARNA9,SCARNA2,HOTAIRM1,OIP5-AS1,SNHG16,RNU11,PCBP1-AS1,COX10-AS1,AC005154.6, | 14.8 | 8.7 | 9.1 | 6.3 | 5.5 | −2.4 | −2.7 | 1.1 | −1.1 |
| PTB | 47 | SNHG1,MIR17HG,NEAT1,SNHG5,MIR155HG,HNRNPU-AS1,RPPH1,RP11-552M11.4,DANCR,CRNDE,HOXB-AS3,RP11-108M9.3,ENTPD1-AS1,CTC-459F4.3,FENDRR,LINC00657,RP11-355O1.11,RP11-29G8.3,MEG3,SCARNA10,SCARNA9,TMEM161B-AS1,SCARNA2,HOTAIRM1,HAS2-AS1,RP11-303E16.2,ZNF674-AS1,OIP5-AS1,SNHG16,LINC00475,AC007246.3,LINC00641,ERVK3-1,SNHG3,MIR22HG,RNU11,CTD-2651B20.6,PCBP1-AS1,SNHG14,RP11-159D12.2,COX10-AS1,LINC00152,AC093323.3,RP11-629O1.2,AC005154.6,CDKN2B-AS1,CTD-3099C6.9, | – | – | – | – | – | – | – | – | – |
| LIN28B | 39 | SNHG10,SNHG1,DLEU2,MIR17HG,SNHG6,SNHG12,NEAT1,XIST,SNHG7,SNHG5,RP11-552M11.4,HOXB-AS3,ENTPD1-AS1,RN7SL1,AC012146.7,ERVK3-1,SNHG3,HNRNPU-AS1,AC009133.15,LINC00641,RP11-473M20.16,MIR22HG,CRNDE,LINC00657,THAP9-AS1,CTD-2651B20.6,CTD-3099C6.9,RP11-1094M14.11,RPPH1,DANCR,LINC00630,SCARNA10,SCARNA2,ZNF674-AS1,OIP5-AS1,SNHG16,RNU11,PCBP1-AS1,AC005154.6, | – | – | – | – | – | – | – | – | – |
| LIN28A | 38 | MIR17HG,SNHG12,SNHG6,XIST,SNHG1,NEAT1,SNHG5,SNHG7,RP11-552M11.4,HOXB-AS3,RN7SL1,ERVK3-1,SNHG3,HNRNPU-AS1,SNORA71A,SNHG8,RP11-473M20.16,SNHG15,MIR22HG,CRNDE,RP11-108M9.3,CTC-459F4.3,LINC00657,ZFAS1,MMP24-AS1,CTD-2651B20.6,CDKN2B-AS1,RP11-1094M14.11,RPPH1,SCARNA10,SCARNA2,HOTAIRM1,OIP5-AS1,SNHG16,RNU4ATAC,RNU11,MAPKAPK5-AS1,PCBP1-AS1, | – | – | – | – | – | – | – | – | – |
| IGF2BP1 | 34 | DLEU2,SNHG1,NEAT1,SNHG6,SNHG7,SNHG5,XIST,HNRNPU-AS1,RP11-1094M14.11,RP11-552M11.4,DANCR,CRNDE,CTC-459F4.3,LINC00657,RP11-29G8.3,CTB-31O20.2,AC012146.7,HOTAIRM1,ZFAS1,RP11-303E16.2,OIP5-AS1,MMP24-AS1,SNHG16,THAP9-AS1,LINC00641,RP11-658F2.8,SNHG3,FTX,MAPKAPK5-AS1,RP11-159D12.2,AC093323.3,RP11-295G20.2,CTD-2006C1.2,ANKRD10-IT1, | 8.3 | 8.2 | 7.9 | 13.5 | 12.7 | 1.6 | 1.5 | 1.1 | 1.4 |
| IGF2BP2 | 33 | SNHG7,DLEU2,SNHG1,SNHG6,NEAT1,SNHG5,XIST,HNRNPU-AS1,RP11-1094M14.11,RP11-552M11.4,DANCR,CRNDE,CTC-459F4.3,LINC00657,RP11-29G8.3,LINC00630,AC012146.7,ZFAS1,RP11-303E16.2,OIP5-AS1,MMP24-AS1,SNHG16,LINC00641,RP11-658F2.8,SNHG3,FTX,CTD-2651B20.6,RP11-159D12.2,AC093323.3,RP11-295G20.2,CTD-2006C1.2,ANKRD10-IT1,CTD-3099C6.9, | 19.9 | 16.9 | 8.3 | 9.5 | 9.8 | −2.1 | −2 | −1.2 | −1.1 |
| IGF2BP3 | 31 | SNHG1,DLEU2,SNHG7,NEAT1,SNHG6,XIST,SNHG5,HNRNPU-AS1,RP11-1094M14.11,RP11-552M11.4,DANCR,CRNDE,CTC-459F4.3,LINC00657,LINC00630,AC012146.7,TMEM161B-AS1,ZFAS1,RP11-303E16.2,OIP5-AS1,MMP24-AS1,SNHG16,LINC00641,RP11-658F2.8,SNHG3,FTX,MAPKAPK5-AS1,RP11-159D12.2,AC093323.3,RP11-295G20.2,ANKRD10-IT1, | 28.7 | 25.7 | 28.1 | 17.1 | 16 | −1.7 | −1.8 | 1.1 | 1.2 |
| ZC3H7B | 31 | SNHG6,SNHG1,DLEU2,NEAT1,SNHG7,SNHG10,SNHG5,XIST,MIR17HG,RP11-552M11.4,SNHG3,HNRNPU-AS1,SNHG8,LINC00641,SNHG15,MIR22HG,FTX,AC093323.3,CRNDE,LINC00657,ZFAS1,MMP24-AS1,RP11-159D12.2,RP11-1094M14.11,RPPH1,SCARNA10,SCARNA9,OIP5-AS1,SNHG16,RP11-658F2.8,RNU11, | 9.7 | 13.7 | 10.5 | 9.1 | 7.8 | −1.1 | −1.2 | – | – |
| TDP43 | 30 | SNHG12,NEAT1,SNHG1,SNHG6,SNHG5,MEG8,SNHG7,XIST,RP11-552M11.4,BCYRN1,RN7SL1,AC007246.3,SNHG3,SNHG8,LINC00641,SNHG15,FTX,HOXA-AS2,SNHG14,LINC00657,MEG3,CTD-2651B20.6,RPPH1,SCARNA10,SCARNA9,SCARNA2,OIP5-AS1,SNHG16,RNU11,PCBP1-AS1, | – | – | – | – | – | – | – | – | – |
| HuR | 30 | SNHG1,SNHG6,DLEU2,SNHG9,MIR17HG,SNHG7,SNHG10,SNHG12,SNHG5,XIST,RP11-303E16.2,HNRNPU-AS1,ZNF674-AS1,OIP5-AS1,MMP24-AS1,SNHG8,RPPH1,RP11-552M11.4,DANCR,CRNDE,SNHG3,SNHG15,MIR22HG,ENTPD1-AS1,LINC00657,RP11-29G8.3,RP11-159D12.2,AC093323.3,RP11-6O2.4,ZFAS1, | – | – | – | – | – | – | – | – | – |
| TIA1 | 29 | MIR17HG,SNHG1,DLEU2,NEAT1,SNHG6,XIST,RP11-552M11.4,ENTPD1-AS1,AC007246.3,SNHG3,HNRNPU-AS1,RP11-820L6.1,SNHG8,RP11-473M20.16,SNHG15,FTX,AC093323.3,LINC00152,CRNDE,RP11-108M9.3,LINC00657,MMP24-AS1,THAP9-AS1,CTD-2651B20.6,DANCR,OIP5-AS1,SNHG16,RNU11,PCBP1-AS1, | 45.1 | 31 | 40.2 | 34 | 23.9 | −1.3 | −1.9 | – | – |
| EWSR1 | 25 | SNHG12,MIR17HG,SNHG1,DLEU2,NEAT1,SNHG7,SNHG5,XIST,ENTPD1-AS1,AC012146.7,SNHG3,HNRNPU-AS1,SNHG8,LINC00641,RP11-473M20.16,SNHG15,CRNDE,LINC00657,AC006116.24,SCARNA10,SCARNA9,OIP5-AS1,SNHG16,RNU11,AC005154.6, | 133.3 | 143.5 | 118.2 | 69.6 | 94.2 | −1.9 | −1.4 | −1.3 | −1.5 |
| SFRS1 | 25 | MIR17HG,SNHG1,SNHG12,NEAT1,SNHG7,SNHG5,XIST,AC012146.7,SNHG3,HNRNPU-AS1,SNORA71A,RP11-29G8.3,TMEM161B-AS1,SNHG8,CTD-2245F17.3,SNHG15,FTX,LINC00657,RP11-206L10.9,ZFAS1,CTD-2651B20.6,HOTAIRM1,OIP5-AS1,SNHG16,PCBP1-AS1, | – | – | – | – | – | – | – | – | – |
| LIN28 | 23 | SNHG12,SNHG6,XIST,SNHG1,SNHG5,SNHG7,RP11-552M11.4,SNHG3,HNRNPU-AS1,RP11-111M22.3,SNHG8,SNHG15,SNHG14,CRNDE,ZFAS1,THAP9-AS1,CTD-2651B20.6,RP5-875O13.1,DANCR,SCARNA10,OIP5-AS1,SNHG16,PCBP1-AS1, | – | – | – | – | – | – | – | – | – |
| TAF15 | 22 | NEAT1,SNHG1,SNHG10,DLEU2,SNHG7,XIST,AC012146.7,SNHG3,HNRNPU-AS1,SNHG8,SNHG15,CRNDE,CTC-459F4.3,LINC00657,ZFAS1,THAP9-AS1,RP11-159D12.2,RP11-1094M14.11,RPPH1,DANCR,OIP5-AS1,SNHG16, | 10.9 | 10.6 | 7.6 | 4.8 | 2 | −2.3 | −5.5 | −1.2 | |
| FXR2 | 21 | SNHG1,SNHG12,SNHG5,XIST,RN7SL1,SNHG3,HNRNPU-AS1,RP11-29G8.3,LINC00641,RP11-473M20.16,SNHG15,CRNDE,LINC00657,RPPH1,SCARNA10,SCARNA9,SCARNA2,OIP5-AS1,SNHG16,RNU11,PCBP1-AS1, | 22.7 | 25.2 | 31.7 | 16.3 | 7.1 | −1.4 | −3.2 | 1.3 | 1.4 |
| C22ORF28 | 20 | NEAT1,SNHG12,SNHG1,SNHG7,XIST,SNHG5,SNHG6,SNHG9,SNHG3,HNRNPU-AS1,RP11-29G8.3,SNHG8,SNHG15,CTC-459F4.3,LINC00657,ZFAS1,RPPH1,SCARNA10,SNHG16,RNU11, | – | – | – | – | – | – | – | – | – |
| FUS-mutant | 19 | DLEU2,SNHG1,NEAT1,SNHG7,XIST,RP11-552M11.4,AC012146.7,SNHG3,HNRNPU-AS1,LINC00641,CRNDE,LINC00657,ZFAS1,THAP9-AS1,RP11-1094M14.11,DANCR,SCARNA9,OIP5-AS1,SNHG16, | – | – | – | – | – | – | – | – | – |
| CAPRIN1 | 17 | SNHG9,SNHG1,SNHG6,SNHG5,XIST,HNRNPU-AS1,SNHG8,LINC00641,SNHG15,AC093323.3,LINC00657,ZFAS1,THAP9-AS1,RPPH1,DANCR,HOTAIRM1,OIP5-AS1, | 84.2 | 70.2 | 78.7 | 79.1 | 80.2 | −1.1 | −1.1 | 1.4 | −1.7 |
| MOV10 | 15 | SNHG1,MIR17HG,SNHG6,XIST,RN7SL1,RNU6-2,HNRNPU-AS1,SNHG8,AC093323.3,LINC00657,ZFAS1,SCARNA2,OIP5-AS1,SNHG16,RNU11, | 3.4 | 4.1 | 4.8 | 3.9 | 4.9 | 1.1 | 1.4 | 1.1 | 1.1 |
| TNRC6 | 12 | NEAT1,SNHG5,SNHG6,SNHG1,XIST,HNRNPU-AS1,RPPH1,CRNDE,LINC00657,RP11-29G8.3,RP11-303E16.2,OIP5-AS1, | – | – | – | – | – | – | – | – | – |
| C17ORF85 | 12 | SNHG6,SNHG12,SNHG5,SNHG1,XIST,LINC00657,RPPH1,SCARNA10,SCARNA9,SCARNA2,SNHG16,RNU11, | 19.6 | 15.9 | 15.3 | 12.2 | 9.8 | −1.6 | −2 | – | – |
| PUM2 | 8 | SNHG6,SNHG5,DLEU2,XIST,HNRNPU-AS1,LINC00657,OIP5-AS1,THAP9-AS1, | 26 | 17.4 | 29.9 | 37.8 | 15.3 | 1.5 | −1.7 | – | – |
| ALKBH5 | 7 | SNHG1,NEAT1,XIST,SNHG7,HNRNPU-AS1,RPPH1,RNU11, | 14.7 | 17.1 | 24.9 | 32.9 | 29.8 | 2.2 | 2 | – | – |
| QKI | 7 | SNHG1,NEAT1,SNHG5,HNRNPU-AS1,CTC-459F4.3,LINC00657,SNHG16, | 8.8 | 9.2 | 6 | 5.4 | 4.6 | −1.6 | −1.9 | −1.1 | –b |
| FXR1 | 5 | MIR17HG,XIST,HNRNPU-AS1,LINC00657,OIP5-AS1, | 20.7 | 19.5 | 20.3 | 26.1 | 25.5 | 1.3 | 1.2 | 1.2 | 1.3 |
a
Fold change in lncRNA, mRNA or protein expression between adenovirus infected and uninfected cells (mock).
b
Expression was not detected or low sequencing reads (<10 FPKM).