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. Author manuscript; available in PMC: 2016 Aug 14.
Published in final edited form as: IEEE Int Conf Bioinform Biomed Workshops. 2012 Oct;2012:712–717. doi: 10.1109/BIBMW.2012.6470224

Figure 1.

Figure 1

The workflow of typical RNA-Seq spliced mapping pipelines. The genome annotation defines the exon splice junction information for spliced mappers. Various sets of exon junction information from different genome annotations affect the output of spliced mappers.