TABLE 1.

Top 20 Rankings by Similarity Measures, Using Percentiles [0, 25] as Thresholds

	Multivariate hypergeometric similarity measure		Pearson correlation		Cosine similarity		Mutual intormation
Rank	Probe	Gene	Probe	Gene	Probe	Gene	Probe	Gene
1	205225_at	ESR1	205225_at	ESR1	205225_at	ESR1	205225_at	ESR1
2	215552_s_at	ESR1	215552_s_at	ESR1	215552_s_at	ESR1	215552_s_at	ESR1
3	212960_at	TBC1D9	205253_at	PBX1	2052S3_at	PBX1	211235_s_at	ESR1
4	212637_s_at	WWP1	209603_at	GATA3	209603_at	GATA3	205253_at	PBX1
5	219717_at	DCAF16	218186_at	RAB25	218186_at	RAB25	209603_at	GATA3
6	217190_x_at	ESR1	211235_s_at	ESR1	211235_s_at	ESR1	218186_at	RAB25
7	218394_at	ROGDI	204508_s_at	CA12	200711_s_at	SKP1	212446_s_at	LASS6
8	203928_x_at	MAPT	200711_s_at	SKP1	203963_at	CA12	203928_x_at	MAPT
9	204242_s_at	ACOX3	203963_at	CA12	204508_s_at	CA12	200711_s_at	SKP1
10	209064_x_at	PAIP1	215867_x_at	CA12	215867_x_at	CA12	203963_at	CA12
11	212638_s_at	WWP1	217190_x_at	ESR1	217190_x_at	ESR1	204508_s_at	CA12
12	204045_at	TCEAL1	212446_s_at	LASS6	212446_s_at	LASS6	215867_x_at	CA12
13	203359_s_at	MYCBP	203928_x_at	MAPT	203928_x_at	MAPT	217190_x_at	ESR1
14	202596_at	ENSA	209759_s_at	DC1	204798_at	MYB	209064_x_at	PAIP1
15	218524_at	E4F1	212956_at	TBC1D9	209602_s_at	GATA3	209730_at	SEMA3F
16	211233_x_at	ESR1	218086_at	NPDC1	209604_s_at	GATA3	211778_s_at	OVOL2
17	221934_s_at	DALRD3	218195_at	C6orf211	209681_at	SLC19A2	208865_at	CSNK1A1
18	201353_s_at	BAZ2A	204798_at	MYB	209759_s_at	DCI	211234_x_at	ESR1
19	206197_at	NME5	210735_s_at	CA12	210735_s_at	CA12	202596_at	ENSA
20	200719_at	SKP1	212099_at	RHOB	212099_at	RHOB	208614_s_at	FLNB