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. Author manuscript; available in PMC: 2016 Aug 14.
Published in final edited form as: IEEE/ACM Trans Comput Biol Bioinform. 2013 Nov-Dec;10(6):1505–1516. doi: 10.1109/TCBB.2013.28

TABLE 2.

Top 20 Rankings by Similarity Measures, Using Percentiles [25, 75] as Thresholds

Multivariate hypergeometric similarity measure Pearson correlation Cosine similarity Mutual information
Rank Probe Gene Probe Gene Probe Gene Probe Gene
1 205225_at ESR1 205225_at ESR1 205225_at ESR1 205225_at ESR1
2 211234_x_at ESR1 215552_s_at ESR1 215552_s_at ESR1 215552_s_at ESR1
3 203359_s_at MYCBP 211235_s_at ESR1 211235_s_at ESR1 211235_s_at ESR1
4 215552_s_at ESR1 211234_x_at ESR1 211234_x_at ESR1 211234_x_at ESR1
5 218259_at MKL2 211233_x_at ESR1 211233_x_at ESR1 211233_x_at ESR1
6 212960_at TBC1D9 204798_at MYB 204798_at MYB 204798_at MYB
7 204798_at MYB 204667_at FOXA1 204667_at FOXA1 217190_x_at ESR1
8 209739_s_at PNPLA4 217190_x_at ESR1 217190_x_at ESR1 204667_at FOXA1
9 201701_s_at PGRMC2 218437_s_at LZTFL1 218437_s_at LZTFL1 209603_at GATA3
10 205597_at SLC44A4 215014_at KCND3 215014_at KCND3 205253_at PBX1
11 206869_at CHAD 209681_at SLC19A2 209681_at SLC19A2 211596_s_at LRIG1
12 203928_x_at MAPT 208613_s_at FLNB 208613_s_at FLNB 203072_at MYO1E
13 205140_at FPGT 209603_at GATA3 203359_s_at MYCBP 201426_s_at VIM
14 212956_at TBC1D9 203359_s_at MYCBP 208716_s_at TMCO1 203359_s_at MYCBP
15 213648_at EXOSC7 208716_s_at TMCO1 209603_at GATA3 218259_at MKL2
16 204242_s_at ACOX3 218259_at MKL2 218259_at MKL2 209681_at SLC19A2
17 204934_s_at HPN 205158_at RNASE4 205158_at RNASE4 218437_s_at LZTFL1
18 211233_x_at ESR1 209696_at FBP1 202454_s_at ERBB3 208613_s_at FLNB
19 200776_s_at BZW1 202454_s_at ERBB3 209696_at FBP1 215014_at KCND3
20 203420_at FAM8A1 217770_at PIGT 217770_at PIGT 204508_s_at CA12