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. Author manuscript; available in PMC: 2016 Aug 14.
Published in final edited form as: IEEE/ACM Trans Comput Biol Bioinform. 2013 Nov-Dec;10(6):1505–1516. doi: 10.1109/TCBB.2013.28

TABLE 3.

Top 20 Rankings by Similarity Measures, Using Percentiles [50, 100] as Thresholds

Multivariate hypergeometric similarity measure Pearson correlation Cosine similarity Mutual information
Rank Probe Gene Probe Gene Probe Gene Probe Gene
1 205225_at ESR1 205225_at ESR1 205225_at ESR1 205225_at ESR1
2 215552_s_at ESR1 215552_s_at ESR1 215552_s_at ESR1 215552_s_at ESR1
3 211235_s_at ESR1 211235_s_at ESR1 211235_s_at ESR1 211235_s_at ESR1
4 200711_s_at SKP1 204667_at FOXA1 204667_at FOXA1 204667_at FOXA1
5 215014_at KCND3 211234_x_at ESR1 211234_x_at ESR1 211234_x_at ESR1
6 211234_x_at ESR1 218437_s_at LZTFL1 218094_s_at DBNDD2 SYS1/SYS1-DBNDD2 218094_s_at DBNDD2/SYS1/SYS1-DBNDD2
7 204667_at FOXA1 218094_s_at DBNDD2/SYS1/SYS1-DBNDD2 218437_s_at LZTFL1 218437_s_at LZTFL1
8 21052_s_at TIC39A 200711_s_at SKP1 200711_s_at SKP1 206571_s_at MAP4K4
9 218035_s_at RBM47 211233_x_at ESR1 202088_at SLC39A6 200711_s_at SKP1
10 203928_x_at MAPT 202088_at SLC39A6 202089_s_at SLC39A6 202088_at SLC39A6
11 41660_at CELSR1 202089_s_at SLC39A6 211233_x_at ESR1 202089_s_at SLC39A6
12 217190_x_at ESR1 204798_at MYB 201169_s_at BHLHE40 211233_x_at ESR1
13 208810_at DNAJB6/TMEM135 208336_s_at TECR 204798_at MYB 219155_at PITPNC1
14 208336_s_at TECR 210652_s_at TIC39A 205186_at DNALI1 219506_at C1orf54
15 201845_s_at RYBP 217860_at NDUFA10 208336_s_at TECR 219806_s_at C11orf75
16 204798_at MYB 205186_at DNALI1 209604_s_at GATA3 201169_s_at BHLHE40
17 218094_s_at DBNDD2/SYS1/SYS1-DBNDD2 209604_s_at GATA3 210652_s_at TTC39A 204798_at MYB
18 201826_s_at SCCPDH 222125_s_at P4HTM 217860_at NDUFA10 205186_at DNALI1
19 206401_s_at MAPT 201169_s_at BHLHE40 222125_s_at P4HTM 208336_s_at TECR
20 203685_at BCL2 218026_at CCDC56 200946_x_at GLUD1 209604_s_at GATA3