Table 3.
CV results of the compared methods
| System | LLL | IEPA | HPRD50 | AIMed | BioInfer | Fμ |
|---|---|---|---|---|---|---|
| Precision, recall, F1-measure (%) | ||||||
| SPET | 56.4/96.1/69.6 | 55.5/28.8/37.1 | 46.2/13.4/20.8 | 29.2/39.9/32.4 | 26.7/89.4/41.0 | 30.0/67.8/41.6 |
| AkanePPI | 76.7/40.2/52.8 | 66.2/51.3/57.8 | 52.0/55.8/53.8 | 29.1/52.9/37.5 | 56.8/85.4/68.2 | 48.1/71.0/57.3 |
| Co-occurrence | 55.9/100./70.3 | 40.8/100./57.6 | 38.9/100./55.4 | 17.8/100./30.1 | 26.6/100./41.7 | 25.2/100./40.2 |
| PT | 56.2/97.3/69.3 | 63.1/66.3/63.8 | 54.9/56.7/52.4 | 39.2/31.9/34.6 | 45.3/58.1/50.5 | 44.5/50.3/47.2 |
| SST | 55.9/100./70.3 | 54.8/76.9/63.4 | 48.1/63.8/52.2 | 42.6/19.4/26.2 | 47.0/54.3/50.1 | 46.1/44.6/45.3 |
| ST | 55.9/100./70.3 | 59.4/75.6/65.9 | 49.7/67.8/54.5 | 40.3/25.5/30.9 | 46.8/60.0/52.2 | 45.4/49.9/47.6 |
| SpT | 55.9/100./70.3 | 54.5/81.8/64.7 | 49.3/71.7/56.4 | 33.0/25.5/27.3 | 44.0/68.2/53.4 | 41.1/54.9/47.0 |
| RFBa | 72.0/73.0/73.0 | 64.0/70.0/67.0 | 60.0/51.0/55.0 | 49.0/44.0/46.0 | −/-/- | |
| edit | 68.0/98.0/78.4 | 77.2/60.2/67.1 | 71.3/45.2/53.3 | 68.8/27.7/39.0 | 50.4/39.2/43.8 | 58.8/37.6/45.9 |
| Cosine | 70.2/81.7/73.8 | 61.3/68.4/64.1 | 59.0/67.2/61.2 | 43.6/39.4/40.9 | 44.8/44.0/44.1 | 46.0/44.8/45.4 |
| SL | 69.0/85.3/74.5 | 69.5/71.2/69.3 | 64.4/67.0/64.2 | 47.5/65.5/54.5 | 55.1/66.5/60.0 | 53.7/66.8/59.5 |
| GK | 72.5/87.2/76.8 | 69.6/82.7/75.1 | 64.3/65.8/63.4 | 52.9/61.8/56.4 | 56.7/67.2/61.3 | 56.5/66.4/61.1 |
| CK | 77.6/86.0/80.1 | 67.5/78.6/71.7 | 68.5/76.1/70.9 | 55.0/68.8/60.8 | 65.7/71.1/68.1 | 62.4/71.1/66.5 |
| PIPE | 73.2/89.6/80.6 | 62.5/83.3/71.4 | 63.8/81.2/71.5 | 57.2/64.5/60.6 | 68.6/70.3/69.4 | 64.4/69.6/66.9 |
a
Since the original work did not include experiment on BioInfer, we therefore leave out Fμ in the table.