Table 5.
CC results of the compared methods with F1-measure
| System | Training corpus | LLL | IEPA | HPRD50 | AIMed | BioInfer | Fμ |
|---|---|---|---|---|---|---|---|
| F1-measure (%) | |||||||
| SPET | LLL | (69.6) | 63.0 | 57.0 | 23.3 | 39.9 | 36.3 |
| IEPA | 55.9 | (37.1) | 47.8 | 25.3 | 37.2 | 33.8 | |
| HPRD50 | 48.8 | 38.6 | (20.8) | 26.2 | 35.1 | 32.1 | |
| AIMed | 28.3 | 26.2 | 18.6 | (32.4) | 32.0 | 31.4 | |
| BioInfer | 30.5 | 27.7 | 17.5 | 26.9 | (41.0) | 34.7 | |
| PT | LLL | (69.3) | 55.2 | 55.5 | 30.0 | 43.3 | 40.1 |
| IEPA | 43.5 | (63.8) | 43.0 | 28.4 | 19.8 | 25.9 | |
| HPRD50 | 40.7 | 57.1 | (52.4) | 35.8 | 29.7 | 33.9 | |
| AIMed | 13.6 | 25.2 | 47.9 | (34.6) | 17.8 | 24.6 | |
| BioInfer | 60.2 | 25.6 | 38.6 | 34.6 | (50.5) | 43.8 | |
| SST | LLL | (70.3) | 58.2 | 54.7 | 29.3 | 41.5 | 39.0 |
| IEPA | 56.6 | (63.4) | 53.1 | 32.7 | 29.9 | 33.6 | |
| HPRD50 | 49.3 | 57.2 | (52.2) | 31.6 | 38.0 | 37.3 | |
| AIMed | 11.4 | 01.2 | 24.2 | (26.2) | 13.3 | 17.4 | |
| BioInfer | 65.0 | 36.8 | 37.2 | 34.1 | (50.1) | 44.0 | |
| ST | LLL | (70.3) | 61.7 | 53.8 | 32.4 | 47.9 | 43.8 |
| IEPA | 43.1 | (65.9) | 41.4 | 33.1 | 44.2 | 41.4 | |
| HPRD50 | 44.7 | 52.8 | (54.5) | 38.2 | 39.9 | 40.4 | |
| AIMed | 12.4 | 33.9 | 45.8 | (30.9) | 21.4 | 25.7 | |
| BioInfer | 58.1 | 23.5 | 30.5 | 33.5 | (52.2) | 44.0 | |
| SpT | LLL | (70.3) | 59.0 | 54.7 | 31.7 | 50.3 | 44.9 |
| IEPA | 54.4 | (64.7) | 49.0 | 32.7 | 31.1 | 34.2 | |
| HPRD50 | 49.3 | 55.4 | (56.4) | 32.5 | 40.0 | 38.8 | |
| AIMed | 17.2 | 18.6 | 43.2 | (27.3) | 24.3 | 25.4 | |
| BioInfer | 58.2 | 56.4 | 51.3 | 34.7 | (53.4) | 47.2 | |
| Cosine | LLL | (73.8) | 63.8 | 56.0 | 30.2 | 42.6 | 40.3 |
| IEPA | 66.5 | (64.1) | 53.5 | 30.1 | 41.4 | 39.4 | |
| HPRD50 | 53.0 | 45.5 | (61.2) | 32.7 | 37.7 | 37.3 | |
| AIMed | 32.7 | 23.0 | 51.2 | (40.9) | 30.3 | 34.1 | |
| BioInfer | 64.7 | 43.6 | 63.0 | 36.5 | (44.1) | 42.4 | |
| edit | LLL | (78.4) | 63.1 | 61.5 | 32.0 | 44.7 | 42.3 |
| IEPA | 64.3 | (67.1) | 52.4 | 34.0 | 38.5 | 39.2 | |
| HPRD50 | 47.5 | 41.9 | (53.3) | 39.4 | 31.7 | 35.7 | |
| AIMed | 03.6 | 07.5 | 38.3 | (39.0) | 15.9 | 23.7 | |
| BioInfer | 60.8 | 58.4 | 62.4 | 39.6 | (43.8) | 43.9 | |
| SL | LLL | (74.5) | 62.6 | 59.0 | 32.4 | 47.9 | 44.1 |
| IEPA | 66.4 | (69.3) | 58.2 | 33.1 | 44.2 | 42.4 | |
| HPRD50 | 61.4 | 53.3 | (64.2) | 38.2 | 39.9 | 41.0 | |
| AIMed | 36.5 | 25.5 | 59.0 | (54.5) | 29.2 | 38.6 | |
| BioInfer | 74.6 | 64.0 | 61.8 | 41.5 | (66.5) | 57.9 | |
| GK | LLL | (76.8) | 64.9 | 59.8 | 33.3 | 42.5 | 41.5 |
| IEPA | 77.6 | (75.1) | 67.5 | 39.1 | 51.7 | 49.4 | |
| HPRD50 | 77.6 | 65.1 | (63.4) | 42.2 | 42.5 | 44.7 | |
| AIMed | 74.5 | 67.4 | 69.0 | (56.4) | 47.1 | 52.3 | |
| BioInfer | 78.0 | 68.0 | 63.9 | 47.2 | (61.3) | 57.2 | |
| CK | LLL | (80.1) | 65.6 | 64.0 | 38.6 | 48.9 | 47.2 |
| IEPA | 83.2 | (71.7) | 66.5 | 40.4 | 55.8 | 52.1 | |
| HPRD50 | 72.2 | 67.8 | (70.9) | 43.9 | 48.6 | 48.9 | |
| AIMed | 73.5 | 68.1 | 68.3 | (60.8) | 53.1 | 57.2 | |
| BioInfer | 76.9 | 71.4 | 68.3 | 49.6 | (68.1) | 62.1 | |
| PIPE | LLL | (80.6) | 65.1 | 69.3 | 42.3 | 51.9 | 50.2 |
| IEPA | 84.5 | (71.4) | 67.8 | 44.5 | 62.1 | 57.1 | |
| HPRD50 | 72.1 | 68.2 | (71.5) | 46.8 | 53.3 | 52.6 | |
| AIMed | 75.2 | 69.0 | 69.4 | (60.6) | 58.2 | 60.1 | |
| BioInfer | 78.5 | 72.3 | 71.3 | 52.1 | (69.4) | 63.9 | |
Bold typeface indicates our best overall result for a corpus (differences under 1 base point are ignored).