Table 1.
Potential target mRNAs cleaved by differentially expressed miRNAs.
| miRNA | Target | Log2 fold change of miRNAs/targets | Description | |||
|---|---|---|---|---|---|---|
| MT/CK | MT-C/Cold | Cold/CK | MT-C/MT | |||
| miR159-5p | Cla001826 | -0.14/0.21 | -0.63/0.34 | -1.19∗/0.53 | -1.45∗/0.66∗ | Calcium-dependent protein kinase (CDPK) |
| miR170-3p | Cla006665 | -0.08/-0.04 | -1.09∗/0.31 | 2.02∗/-0.63∗ | 1.20∗/-0.28 | GRAS family transcription factor |
| miR171-3p | Cla006665 | 0.20/-0.04 | -0.31/0.31 | 1.04∗/-0.63∗ | 0.39/-0.28 | GRAS family transcription factor |
| miR399-5p | Cla008388 | -1.31∗/0.65∗ | -1.43∗/0.93∗ | 1.55∗/-3.83∗ | 1.43∗/-3.55∗ | Pentatricopeptide repeat protein 77 (PPRP77) |
| Cla005858 | /0.23 | /-0.18 | /-0.88∗ | /-1.29∗ | NEFA-interacting nuclear protein NIP30 | |
| miR482-5p | Cla014776 | -0.05/0.10 | 0.54/-0.85 | 2.01∗/-0.67 | 2.60∗/-1.61∗ | Os10g0422600 |
| Cla013089 | /0.43 | /-0.97 | /-3.27∗ | /-4.67∗ | Leucine-rich repeat family protein (LRR) | |
| Cla009419 | /0.12 | /-5.36 | /2.59∗ | /-8.06∗ | Unknown | |
| Cla016187 | /0.86 | /-1.31 | /-0.56 | /-2.57∗ | C2H2 zinc-finger transcription factor (C2H2-ZFTF) | |
| miR858 | Cla017745 | -0.08/-2.84 | -0.11/-0.23 | -0.04/1.29 | -1.02∗/3.90∗ | Late embryogenesis abundant (LEA) protein like |
| Cla017373 | /-0.67 | /0.30 | /1.50∗ | /2.47∗ | R2R3 MYB transcription factor | |
| miR2635-5p | Cla021237 | 7.03/-0.19 | -7.96/0.14 | 4.64∗/-0.70∗ | -1.04/-0.37 | Cryptic precocious CRP/Med12 |
| miR2916-5p | Cla001518 | 0.86/0.39 | -5.18∗/0.60∗ | 8.51/-1.31∗ | 0.00/-1.09∗ | DNA primase large subunit |
| miR5021-5p | Cla010003 | -1.08∗/0.64∗ | 0.59/-0.02 | -0.21/1.13∗ | 1.47/0.46 | 3-ketoacyl-CoA reductase 2 (KCR2) |
| Cla015503 | /1.53∗ | /-0.69 | /0.91 | /-1.32 | RING-H2 zinc finger protein (RING-H2 ZFP) | |
| Cla001461 | /1.33∗ | /0.25 | /0.02 | /-1.06 | Unknown | |
| Cla018974 | /1.09∗ | /0.36 | /-0.65 | /-1.38 | J023065D24 | |
| miR5997-3p | Cla009517 | 0.00/-0.12 | -0.88/0.33 | 4.64∗/-1.12∗ | 0.88/-0.67 | Vacuolar protein sorting-associated protein (VPS) 13 |
| Cla021487 | /-0.09 | /0.30 | /-0.73∗ | /-0.35 | Cysteine-rich repeat secretory protein (CRRS) 12 | |
| miR7540-3p | Cla015655 | 1.41/-0.15 | 0.17/1.01 | 1.19∗/-1.33∗ | -0.05/-0.18 | Fasciclin-like arabinogalactan protein (FLA) 2 |
| miR8029-3p | Cla018379 | 3.29∗/-0.17 | 0.80/0.70 | 2.60∗/-0.68∗ | 0.15/0.18 | Monodehydroascorbate reductase (MDAR) |
| Cla008020 | /0.01 | /0.49 | /-0.68∗ | /-0.21 | Cyclase/dehydrase | |
| Cla002580 | /-0.10 | /0.33 | /-0.80∗ | /-0.36 | Lysine-specific demethylase (LSD) 5A | |
| Cla012681 | /-0.29 | /0.36 | /-0.92∗ | /-0.27 | Pentatricopeptide repeat-containing protein (PPRP) | |
| Cla004188 | /-0.42 | /-0.04 | /-0.62∗ | /-0.24 | MYB transcription factor | |
| Cla004079 | /-1.03∗ | /-0.50 | /-3.11∗ | /-2.58 | Unknown | |
| Cla011614 | /-0.62∗ | /-0.18 | /-0.27 | /0.17 | Kinesin like protein | |
| Cla014313 | /-0.77∗ | /-0.23 | /-0.40 | /0.13 | Peroxidase (POD) | |
| novel-m0006-3p | Cla012226 | -0.70/-0.11 | -1.59∗/0.59∗ | 2.14∗/-0.25 | 1.26/0.46 | YABBY |
| hboxnovel-m0030-5p | Cla014681 | -0.11/0.88 | 4.84∗/-1.50∗ | -8.14/-2.35∗ | 0.13/-4.73∗ | K+ transporter |
| novel-m0045-3p | Cla003322 | 1.44/-0.47 | -1.89∗/0.71∗ | 0.97/-1.11∗ | -2.40/0.08 | Altered inheritance of mitochondria protein (AIMP) 32 |
| novel-m0048-3p | Cla014357 | 0.71/0.11 | -5.18∗/0.60∗ | 1.36/-2.46∗ | -7.90/-1.97∗ | Glycyl-tRNA synthetase (GARS) |
| Cla015456 | /-0.46 | /0.65∗ | /-1.87∗ | /-0.76 | Nitrate transporter (NRT) | |
| Cla022458 | /0.48 | /1.55∗ | /-1.03 | /0.05 | Dehydration-responsive element-binding protein (DREB) | |
| Cla017676 | /-0.24 | /1.22∗ | /-1.47 | /-0.01 | Kinesin-5 transcription factor | |
| Cla011198 | /0.00 | /0.74∗ | /0.89 | /1.63 | BHLH transcription factor | |
| Cla009841 | /0.18 | /0.73∗ | /-0.98 | /-0.43 | Ethylene-regulated nuclear protein ERT2-like | |
| Cla010176 | /-0.08 | /0.65∗ | /0.44 | /-0.29 | TCP transcription factor | |
| Cla006034 | /0.66 | /1.31∗ | /-0.15 | /0.50 | Ankyrin repeat-containing protein (Akr1p) | |
| Cla018866 | /-0.14 | /0.63∗ | /-0.49 | /0.27 | Nucleolar and coiled-body phosphoprotein (NOLC) 1 | |
| Cla016714 | /0.10 | /1.82∗ | /-2.37 | /-0.66 | Os02g0202300 | |
| Cla017355 | /0.05 | /0.71∗ | /-1.90∗ | /-1.23∗ | WRKY transcription factor | |
| Cla006039 | /-0.31 | /1.07∗ | /-2.55∗ | /-1.17 | Protein forked1 | |
| novel-m0058-5p | Cla015802 | 0.86/0.10 | -5.89∗/1.19∗ | 5.89∗/-3.96∗ | -1.36/-2.87∗ | Pentatricopeptide repeat-containing protein (PPRP) |
| Cla005115 | /0.15 | /0.80∗ | /-1.39∗ | /-0.74 | Chromatin remodeling complex subunit (SWI/SNF) | |
| novel-m0059-5p | Cla019857 | 1.98/-1.02 | -0.82 / 1.01 | 1.10/0.35 | -1.63∗/2.38∗ | TIR-NBS-LRR disease resistance protein |
| novel-m0070-5p | Cla005664 | -1.60∗/0.24 | 0.83/-0.35 | -0.50/0.00 | 1.93∗/-0.59∗ | Nitrate transporter (NRT) |
| Cla016054 | /0.96∗ | /0.22 | /-0.61 | /-1.35 | UDP-glucosyltransferase (GTase) 1 | |
| novel-m0077-5p | Cla004726 | 0.00/-0.13 | -0.24/0.46 | 5.58∗/-0.87∗ | 1.82/-0.28 | IQ-domain 10 |
| novel-m0081-3p | Cla004682 | 1.25∗/-0.46 | -0.69/0.17 | 0.06/0.14 | -2.17∗/0.77∗ | Serine/threonine-protein phosphatase (Ser/Thr-PPs) |
∗Indicates significant difference.