Table 2. A summary of the comparison of ab initio predicted proteomes between Hordeum and other plant species.

Plant species*	Cv. Clipper		LR Sahara		Reference
	#hits	%hits	#hits	%hits
Amborella trichopoda	18,574	69.2	18,604	69.3	59
Aquilegia coerulea	21,480	86.5	21,534	86.8	Aquilegia coerulea Genome Sequencing Project, http://phytozome.jgi.doe.gov/
Arabidopsis thaliana	23,111	84.3	23,166	84.5	60
Brachypodium distachyon	25,106	94.6	25,151	94.7	61
Eucalyptus grandis	30,554	84.0	30,582	84.1	62
Hordeum vulgare cv. Barke	103,719	61.7	101,799	60.5	63
Hordeum vulgare cv. Bowman	119,845	52.6	118,472	52.0	63
Hordeum vulgare cv. Morex	109,745	57.2	108,741	56.7	63
Medicago truncatula	25,115	56.9	25,154	57.0	64
Oryza sativa	28,446	72.8	28,534	73.1	65
Populus trichocarpa	34,478	83.4	34,489	83.4	66
Sorghum bicolor	26,419	95.7	26,442	95.8	67
Zea mays	62,166	70.0	62,311	70.2	68

OrthoFinder (v0.2.8²³) species pair-wise BLASTP protein sequence comparisons of Hordeum vulgare cv. Clipper and LR Sahara were used against other sequenced plant species. Source: Phytozome (http://www.phytozome.net version 10.2). Augustus (v2.5.5) was used to construct de novo predicted proteomes unless proteome predictions were already available. Pairwise species blast was performed using NCBI BLAST+ v2.2.29.