Table 1. Genome sequencing data for the parents and F2 population used for construction of the ultra-dense SNP map.
Sample name | Raw read number | Sequencing Depth (×)a | Ratio of high-quality reads | SNP/InDel number | Unique SNP number | |
---|---|---|---|---|---|---|
Q ≥ 20 | Q ≥ 30 | |||||
Yuzhi DS899 (dt1) (P1) | 34,667,944 | 9.79 | 95.25% | 94.99% | 192,744 | 46,767 |
JS012 (Dt) (P2) | 63,820,640 | 18.03 | 91.78% | 91.55% | 781,528 | 397,964 |
120 F2 progeny | 4,248,706,712 | / | 96.10% | 91.26% | 54,012,159 | / |
Average | 25,405,889 | 10.00 | 96.05% | 91.29% | 450,101 | / |
Total | 4,347,195,296 | / | / | / | 54,986,431 | / |
aThe genome sequencing depth was calculated based on a sesame genome size of 354 Mb, as estimated by K-mer19.