Table 1.
Coverage |
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Strain | Type Strain | Source | Location | Optical Map | 454 | Illumina | PacBio | Total | Reference | Accession Number(s) | |
C. insulaenigrae NCTC 12927 | Y | Marine mammal | Scotland | Y | 107× | H; 1,347× | N/A | 1,454× | Foster et al. 2004 | CP007770 | |
C. lari concheus LMG 11760 | N | Human | Canada (ONT) | Y | 71× | H; 1,287× | N/A | 1,358× | Debruyne et al. 2009 | CP007771 | |
UPTC CCUG 22395 | N | Human | France | N | 61× | H; 1,478× | N/A | 1,539× | N/A | CP007776 | |
UPTC NCTC 11845 | N | River water | United Kingdom | Y | 123× | H; 1,048× | 182× | 1,352× | N/A | CP007775 | |
UPTC RM16701 | N | River water | United States (CA) | N | 82× | M; 708× | N/A | 790× | N/A | CP007777 | |
UPTC RM16712 | N | River water | United States (CA) | N | 110× | M; 551× | N/A | 661× | N/A | CP007778 | |
C. peloridis LMG 23910 | Y | Shellfish | The Netherlands | Y | 63× | H; 1,175× | 222× | 1,459× | Debruyne et al. 2009 | CP007766CP007767 (pPEL1)CP007768 (pPEL2) | |
C. subantarcticus LMG 24374 | N | Gentoo penguin | S. Georgia, Antarctica | Y | 35× | H; 1,146× | 141× | 1,323× | Debruyne et al. 2010a | CP007772 | |
C. subantarcticus LMG 24377 | Y | Gray-headed albatross | S. Georgia, Antarctica | Y | 136× | H; 1,086× | 138× | 1,360× | Debruyne et al. 2010a | CP007773 | |
C. volucris LMG 24379 | N | Black-headed gull | Sweden | Y | 57× | H; 1,381× | N/A | 1,438× | Debruyne et al. 2010b | CP007774 | |
Campylobacter spp. RM16704 | Na | River water | United States (CA) | N | 84× | M; 475× | 164× | 723× | N/A | CP007769 |
Note.—H, HiSeq sequencing; M, MiSeq sequencing; N/A, not applicable.
aIf Campylobacter spp. strain RM16704 represents a novel species, then it would likely be designated as the type strain.