Table 1. Percentage of SNPs in a particular range of MAF.

Scenario	MAF	Type	<3%	3%-5%	5%-10%	10%-15%	>15%
SHL	High	Marker	0.061	0.046	0.117	0.114	0.663
	Low	QTL	0.314	0.243	0.229	0.200	0.014
SHR	High	Marker	0.065	0.049	0.119	0.115	0.652
	Random	QTL	0.029	0.057	0.100	0.100	0.714
SRR	Random	Marker	0.082	0.050	0.096	0.104	0.668
	Random	QTL	0.100	0.029	0.114	0.114	0.643

MAF: minor allele frequency; SHL: markers and QTL were selected for high and low MAFs, respectively; SHR: markers were selected for high MAF, whereas QTL were selected at random; SRR: markers and QTL were selected at random