Table 1.
RABV N gene sequence for external and internal primer design for different rabies variant.
| Nonhematophagous bat | |||
| GI | Host | Country | Collection date |
|
| |||
| AF351832.1 | Eptesicus fuscus (big brown bat) | ||
| GU644667.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2005 |
| GU644664.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2003 |
| GU644662.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2003 |
| AY039229.1 | Eptesicus fuscus (big brown bat) | USA: Adams County, Pennsylvania | 1984 |
| AY039228.1 | Eptesicus fuscus (big brown bat) | USA: El Paso County, Colorado | 1985 |
| GU644676.1 | Eptesicus fuscus (big brown bat) | USA: Virginia | 2004 |
| GU644668.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2005 |
| AF351862.1 | Eptesicus fuscus (big brown bat) | ||
| GU644655.1 | Eptesicus fuscus (big brown bat) | USA: Iowa | 2005 |
| GU644695.1 | Eptesicus fuscus (big brown bat) | USA: Washington | 2005 |
| GU644661.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2003 |
| AY039227.1 | Eptesicus fuscus (big brown bat) | USA: Washington | 1987 |
| GU644677.1 | Eptesicus fuscus (big brown bat) | USA: Virginia | 2004 |
| GU644670.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2005 |
| GU644666.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2005 |
| GU644660.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2003 |
| GU644656.1 | Eptesicus fuscus (big brown bat) | USA: Iowa | 2005 |
| GU644654.1 | Eptesicus fuscus (big brown bat) | USA: Iowa | 2005 |
| GU644690.1 | Eptesicus fuscus (big brown bat) | USA: Washington | 2004 |
| GU644669.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2005 |
| AF351861.1 | Eptesicus fuscus (big brown bat) | ||
| GU644689.1 | Eptesicus fuscus (big brown bat) | USA: Washington | 2004 |
| GU644684.1 | Eptesicus fuscus (big brown bat) | USA: Washington | 2003 |
| GU644663.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2003 |
| GU644659.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2003 |
| GU644657.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2003 |
| AF351833.1 | Eptesicus fuscus (big brown bat) | ||
| AF351828.1 | Eptesicus fuscus (big brown bat) | ||
| GU644665.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2005 |
| GU644671.1 | Eptesicus fuscus (big brown bat) | USA: New Jersey | 2005 |
| GU644658.1 | Eptesicus fuscus (big brown bat) | USA: Michigan | 2003 |
| GU644652.1 | Eptesicus fuscus (big brown bat) | USA: Georgia | 2004 |
| AF351831.1 | Eptesicus fuscus (big brown bat) | ||
| AF351855.1 | Eptesicus fuscus (big brown bat) | ||
| GU644754.1 | Nycticeius humeralis (evening bat ) | USA: Florida | 2001 |
| AF351854.1 | Eptesicus fuscus (big brown bat) | ||
| AF394868.1 | Antrozous pallidus (pallid bat) | USA: Monterey, California | 1991 |
| AY039225.1 | Myotis austroriparius (southeastern myotis bat) | USA: Highlands County, Florida | 1988 |
| AF351829.1 | Eptesicus fuscus (big brown bat) | ||
| AF394871.1 | Myotis californicus (California bat) | USA: Plumas County, California | 1987 |
| AF351859.1 | Eptesicus fuscus (big brown bat) | ||
| AF351860.1 | Eptesicus fuscus (big brown bat) | ||
| GU644673.1 | Eptesicus fuscus (big brown bat) | USA: New Jersey | 2005 |
| AY039226.1 | Eptesicus fuscus (big brown bat) | USA: Perry County, Pennsylvania | 1984 |
| AF351839.1 | Myotis sp. (bat) | ||
| AF351853.1 | Eptesicus fuscus (big brown bat) | ||
| HQ341796.1 | Myotis chiloensis (bat) | Chile | 2009 |
| AF351827.1 | Eptesicus fuscus (big brown bat) | ||
| GU644675.1 | Eptesicus fuscus (big brown bat) | USA: New Jersey | 2005 |
|
| |||
| Skunk | |||
| GI | Host | Country | Collection date |
|
| |||
| JQ513553 | Skunk V854 | Mexico: San Luis Potosí | 2002 |
| JQ513552 | Skunk V658 | USA: Mariposa County, California | 1997 |
| JQ513548 | Skunk V652 | USA: Mariposa County, California | 1997 |
| JQ513547 | Skunk V651 | USA: Mariposa County, California | 1997 |
| JQ513551 | Fox V657 | USA: Mariposa County, California | 1997 |
| JQ513541 | Dog V640 | USA: Sonoma County, California | 1994 |
| JQ513546 | Skunk | USA: Trinity County, California | 1997 |
| JQ513542 | Mountain lion | USA: Yolo County, California | 1994 |
| JQ513545 | Skunk | USA: Mendocino County, California | 1997 |
| JQ513549 | Skunk | USA: Amador County, California | 1997 |
| JQ513539 | Skunk | USA: Glenn County, California | 1994 |
| JQ513544 | Skunk | USA: Colusa County, California | 1994 |
| JQ513540 | Skunk | USA: Sutter County, California | 1994 |
| JQ513550 | Skunk | USA: Glenn County, California | 1997 |
| FJ228485 | Cow | Mexico: Chihuahua | 1999 |
| FJ228484 | Spilogale putorius leucoparia, skunk | Mexico: San Luis Potosí | 2002 |
| FJ228483 | Spilogale putorius leucoparia, skunk | Mexico: Zacatecas | 2001 |
| JX856026.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX856036.1 | Bovine (cow) | USA | 2009 |
| JX856035.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855972.1 | Felis silvestris (bobcat) | USA | 2009 |
| JX856024.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX856023.1 | Bovine (cow) | USA | 2009 |
| JX856017.1 | Bovine (cow) | USA | 2009 |
| JX856016.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX856015.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX856014.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX856006.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX856004.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX856001.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855993.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855990.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855980.1 | Felis catus (cat) | USA | 2009 |
| JX855988.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855987.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855986.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855985.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855984.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855981.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855979.1 | Felis catus (cat) | USA | 2009 |
| JX855973.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855976.1 | Canis lupus familiaris (dog) | USA | 2009 |
| JX855975.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855974.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855970.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855968.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855967.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855966.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855965.1 | Equus caballus (horse) | USA | 2009 |
| JX855963.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
| JX855962.1 | Mephitis mephitis (striped skunk) | USA | 2009 |
|
| |||
| Dog | |||
| GI | Host | Country | Collection date |
|
| |||
| FJ228513.1 | Canis lupus familiaris (dog) | Mexico: Estado de México | 2000 |
| FJ228512.1 | Canis lupus familiaris (dog) | Mexico: Estado de México | 2002 |
| FJ228507.1 | Canis lupus familiaris (dog) | Mexico: Estado de México | 1999 |
| FJ228532.1 | Canis lupus familiaris (dog) | Mexico: Puebla | 1995 |
| FJ228506.1 | Canis lupus familiaris (dog) | Mexico: Guerrero | 1999 |
| FJ228505.1 | Canis lupus familiaris (dog) | Mexico: Tlaxcala | 2002 |
| FJ228504.1 | Canis lupus familiaris (dog) | Mexico: Puebla | 2001 |
| FJ228503.1 | Canis lupus familiaris (dog) | Mexico: Tlaxcala | 2000 |
| FJ228502.1 | Canis lupus familiaris (dog) | Mexico: Distrito Federal | 1999 |
| KJ001535.1 | Canis lupus familiaris (dog) | Mexico | 2005 |
| KJ001525.1 | Canis lupus familiaris (dog) | Mexico | 2009 |
| KJ001524.1 | Canis lupus familiaris (dog) | Mexico | 2005 |
| KJ001518.1 | Canis lupus familiaris (dog) | Mexico | 2011 |
| KJ001517.1 | Canis lupus familiaris (dog) | Mexico | 2011 |
| KJ001516.1 | Canis lupus familiaris (dog) | Mexico | 2011 |
| KJ001515.1 | Canis lupus familiaris (dog) | Mexico | 2011 |
| KJ001509.1 | Canis lupus familiaris (dog) | Mexico | 2009 |
| KJ001502.1 | Canis lupus familiaris (dog) | Mexico | 2006 |
| KJ001500.1 | Canis lupus familiaris (dog) | Mexico | 2006 |
| KJ001499.1 | Canis lupus familiaris (dog) | Mexico | 2006 |
| KJ001492.1 | Canis lupus familiaris (dog) | Mexico | 2005 |
| KJ001490.1 | Canis lupus familiaris (dog) | Mexico | 2005 |
| KJ001488.1 | Canis lupus familiaris (dog) | Mexico | 2005 |
| FJ228525.1 | Canis lupus familiaris (dog) | Mexico: Yucatán | 2002 |
| FJ228523.1 | Canis lupus familiaris (dog) | Mexico: Yucatán | 1998 |
| FJ228521.1 | Canis lupus familiaris (dog) | Mexico: Durango | 1991 |
| FJ228518.1 | Canis lupus familiaris (dog) | Mexico: Chiapas | 2002 |
| FJ228511.1 | Bos taurus (cow) | Mexico: Puebla | 1994 |
| FJ228510.1 | Sus scrofa domesticus (pig) | Mexico: Distrito Federal | 1991 |
| FJ228509.1 | Mustela putorius furo (ferret) | Mexico: Distrito Federal | 1990 |
| FJ228508.1 | Homo sapiens (human) | Mexico: Distrito Federal | 1991 |
| FJ228522.1 | Bos taurus (cow) | Mexico: Chihuahua | 1994 |
| FJ228519.1 | Felis catus (cat) | Mexico: Michoacán | 1990 |
| AY854591.1 | Canis lupus familiaris (dog) | Mexico | |
| AY854589.1 | Canis lupus familiaris (dog) | Mexico | |
| FJ228526.1 | Canis latrans (coyote) | Mexico: Coahuila | 2001 |
|
| |||
| Vampire bat | |||
| GU991828.1 | Desmodontinae (vampire bat V3) | ||
| GU991827.1 | Desmodontinae (vampire bat V3) | Mexico: East Mexico | 1999 |
| GU991826.1 | Desmodontinae (vampire bat V3) | Mexico: East Mexico | 1999 |
| GU991825.1 | Desmodontinae (vampire bat V3) | Mexico: East Mexico | 2004 |
| GU991824.1 | Desmodontinae (vampire bat V11) | Mexico: East Mexico | 2002 |
| GU991823.1 | Desmodontinae (vampire bat V11) | East Mexico | 2003 |
| KP202393.1 | Desmodontinae (vampire bat) | Mexico | 1988 |
| AY854592.1 | Desmodontinae (vampire bat) | Mexico | |
| AY854587.1 | Desmodontinae (vampire bat) | Mexico | |
| AY854595.1 | Desmodontinae (vampire bat) | Mexico | |
| AY854594.1 | Desmodontinae (vampire bat) | Mexico | |
| FJ228491.1 | Bos taurus (cow) | Mexico: Tamaulipas | 2003 |
| FJ228490.1 | Bos taurus (cow) | Mexico: Veracruz | 2003 |
| FJ228489.1 | Ovis aries (sheep) | Mexico: Hidalgo | 2003 |
| FJ228488.1 | Bos taurus (cow) | Mexico: San Luis Potosí | 2004 |
| AY877435.1 | Desmodontinae (vampire bat) | ||
| AY877434.1 | Desmodontinae (vampire bat) | ||
| AY877433.1 | Desmodontinae (vampire bat) | ||