Table 1. Genes in the sugarcane mitochondrial genome.

Gene function	Gene name
Complex I	nad1[5], nad2[5], nad3, nad4[4], nad4L, nad5[5], nad6, nad7[5], nad9
Complex II	—
Complex III	cob
Complex IV	cox1, cox2[2], cox3
Complex V	atp1, atp4, atp6, (2x)atp8, atp9
Cytochrome-c biogenesis	ccmB, ccmC, ccmFc[2], ccmFn
SecY-independent transport	mttB
Ribosomal RNAs	5S rRNA, 18S rRNA, 26S rRNA
Ribosomal protein small subunit	rps1, rps2, rps3[2], rps4, rps12, rps13
Ribusomal protein large subunit	rpl16
Intron maturase	matR
Chloroplast transferred complete genes	rpl14, rpl16, rpl23, rpl36, rps8, rps11
Conserved Hypothetical genes	orf25-cp, orf34-cp, orf74-cp, orf99-cp, orf104, orf137-cp, orf179-cp
Transfer RNA	trnC-GCA-cp, trnD-GUC, trnE-UUC, trnF-GAA-cp, trnH-GUG-cp, trnI-cp, trnK-UUU, (2x)trnL-CAA, (2x)trnM-CAU, trnM-CAU-cp, trnN-GUU-cp, (2x)trnP-UGG-cp, trnQ-UUG, trnS-GCT, trnS-GGA-cp, trnS-TGA, trnW-CCA-cp, trnY-GTA
Pseudogenes	sdh4
cp-derived gene fragment transfer	atpA, InfA, PetB, PetD, RpoA, atpB, atpE, atpH, ndhC, ndhJ, ndhK, orf251, rbcL, rpl2[2], rpoC1, rpoC2, rps19

Bracketed numbers indicate copy number of each gene, square brackets indicate number of exons, chloroplast derived tRNAs have -cp appended to them.