Table 2. emm types distribution among Lancefield groups and MLST STs of 108 S. dysgalactiae horse isolates.
emm typea | Lancefield group |
STs (No. of isolates) | Total | |
---|---|---|---|---|
C | L | |||
stC210 | 16 | 226 (7), 196 (5), otherb | 16 | |
stC12 | 10 | 202 (3), 208 (2), otherc | 10 | |
stG5063 | 6 | 203 (6) | 6 | |
stC1 | 5 | 194 (5) | 5 | |
emm229 | 4 | 199 (4) | 4 | |
stC37 | 4 | 198 (4) | 4 | |
stC14 | 3 | 220 (2), 224 (1) | 3 | |
stC13 | 2 | 216 (2) | 2 | |
stC8 | 2 | 227 (2) | 2 | |
stG15 | 2 | 211 (2) | 2 | |
stC11 | 2 | 201 (1)d, 228 (1) | 2 | |
stC16 | 2 | 218 (1)d, 225 (1)d | 2 | |
stC17 | 1 | 212 (1)d | 1 | |
stC7505 | 1 | 10 (1) | 1 | |
stG14 | 1 | 216 (1) | 1 | |
stG2574 | 1 | 231 (1) | 1 | |
stG6 | 1 | 215 (1) | 1 | |
stL1 | 1 | 210 (1)d | 1 | |
stL2764 | 1 | 232 (1) | 1 | |
NT | 38 | 5 | 198 (9), 201 (4), 222 (4), 194 (4), 217 (3), othere | 43 |
Total | 96 | 12 | naf | 108 |
aemm types are given by decreasing order of frequency; NT, non-typeable, which included isolates for which no PCR product could be obtained (n = 29) or unspecific amplification of more than one PCR product occurred (n = 14).
bincluded 4 STs with one isolate (STs 197, 213, 221 and 229).
cincluded 5 STs with one isolate (STs 199, 200, 204, 230 and 237).
demm type assignement by whole genome sequence, since the isolate was non-typeable by PCR.
eincluded 4 STs with two isolates (STs 199, 200, 207 and 236) and 11 STs with one isolate (STs 195, 208, 209, 214, 218, 219, 223, 227, 233, 234 and 235).
fna, not applicable.