Skip to main content
. 2016 Aug 17;6:31721. doi: 10.1038/srep31721

Table 3. Amino acid (10th position, bold) for C4 specificity across species with different diversification point in evolutionary scale (in Mya).

Speciesa Amino acid with flanking region Type Taxonomy Mya Reference
Physcomitrella patens LQGNPTLKQRLRLREPY C3 Bryophytes 450 Rensing, et al.66
LQGNPSLKQRLRLREPY C3
LQGNPTLKQRLRLREPV C3
LEGNPTLKQRLRLREQY C3
Selaginella moellendorffii LAGNPILKQRLSLREPF C3 Lycophytes 410 Banks, et al.67
LEENPTLKQRLRLREPF C3
PA, AS, GG, JC, PS, TB LEGDPYLKQRLRLRDSY C3 Gymnosperm 300 Nystedt, et al.64
Amborella trichopoda LEGDPYLKQRLRLRDSY C3 Basal Angiosperm 130 Soltis, et al.68
Oryza sativa LEGDLYLKQRLRLRNAY C3 Oryzoideae (BOP clade)p 60q Kersey, et al.31
LEGDPYLRQRLRIRDSY C3
LEGDPYLKQRLRLRDAY C3
LEGDPYLKQRLRLRESY C3
Guadua sp. LEGDPYLKQRLRLRESY C3 Bambusoideae (BOP clade)p Christin, et al.69
LESDPYLRQRLMLRDSY C3
Brachypodium Refer Table 2 C3 Pooideae (BOP clade)p 35q  
Triticeae Refer Table 2 ? 11.6q  
Alloteropsis spp. LEGDPYLKEGLRLRNPY C4b Panicoideae (PACMAD clade)p 20-27q Christin, et al.69
LEGDPYLKQQLRLRDPY C4c
LEGSPGLKQRLRLRDPY C3d
LEGDPYLKQRLRLRESY C3e
LEGDPYLKQRLRIRDSY C3f
LEGDPYLKQRLRLRDAY C3g
LEGGPYLKQRLRLRDPY C3h
LEGDLYLKQRLRLRDAY C3i
LEGDPYLKQRLRLRDPY C3j
Panicum spp. LEGDPFLKQSLRLRNPY C4k Panicoideae (PACMAD clade)p 18-27q Christin, et al.70 Christin, et al.69
LEGDPYLKQGLRLRNPY C4l
LEADPFLKQSLRLRNPY C4m
LEGDLYLKQRLRLRDAY C3n
LEGDPYLKQRLRLRDPY C3o
Setaria italica LESDPGLKQQLRLRDPY C4 Panicoideae (PACMAD)p 16-27q Bennetzen, et al.71 Christin, et al.69
LEGDPYLKQRLRLRESY C3
LESDPGLQQQLMLRDSY C3
LEGDLYLKQRLRLRDAY C3
LEGDPYLKQRLRIRDSY C3
Zea mays LEGDPFLKQGLVLRNPY C4 Panicoideae (PACMAD)p 16q Schnable, et al.72
LEGDLYLKQRLRLRDAY C3
LEGDPYLKQRLRIRDSY C3
LEGDPYLKQRLRLRESY C3
Sorghum bicolor LEGDPYLKQGLRLRNPY C4 Panicoideae (PACMAD)p 13q Paterson, et al.73
LEGDLYLKQRLRLRDAY C3
LEGDPYLKQRLRIRDSY C3
LEGDPYLKQRLRLRESY C3
LEGDPYLKQRLRLRDAY C3
Amaranthus hypochondriacus LDADPYLKQILRLRDPY C4 Dicot - ADO15315 (Accession number)

aSpecies arranged in the order of evolution except Amaranthus; PA: Picea abies; AS: Abies sibiria; GG: Gnetum gnemon; JC: Juniperus communis; PS: Pinus sylvestris; TB: Taxus baccata; Oryza sativa: includes indica and japonica; Alloteropsis spp.: A. cimicinad-g, A. angustac,f,g,i, A. semialata subsp semialatab,f-i, A. s. subsp ecklonianag,i,j; Panicum spp.: P. bisulcatumn, P. capillarel, P. coloratuml, P. fluviicolal, P. laetumk,m, P. miliaceumk,l, P. millegranao, P. phragmitoidesl, P. turgiduml.

pSoreng, et al.56.

qChalupska, et al.57.