Table 3. Amino acid (10th position, bold) for C4 specificity across species with different diversification point in evolutionary scale (in Mya).
Speciesa | Amino acid with flanking region | Type | Taxonomy | Mya | Reference |
---|---|---|---|---|---|
Physcomitrella patens | LQGNPTLKQRLRLREPY | C3 | Bryophytes | 450 | Rensing, et al.66 |
LQGNPSLKQRLRLREPY | C3 | ||||
LQGNPTLKQRLRLREPV | C3 | ||||
LEGNPTLKQRLRLREQY | C3 | ||||
Selaginella moellendorffii | LAGNPILKQRLSLREPF | C3 | Lycophytes | 410 | Banks, et al.67 |
LEENPTLKQRLRLREPF | C3 | ||||
PA, AS, GG, JC, PS, TB | LEGDPYLKQRLRLRDSY | C3 | Gymnosperm | 300 | Nystedt, et al.64 |
Amborella trichopoda | LEGDPYLKQRLRLRDSY | C3 | Basal Angiosperm | 130 | Soltis, et al.68 |
Oryza sativa | LEGDLYLKQRLRLRNAY | C3 | Oryzoideae (BOP clade)p | 60q | Kersey, et al.31 |
LEGDPYLRQRLRIRDSY | C3 | ||||
LEGDPYLKQRLRLRDAY | C3 | ||||
LEGDPYLKQRLRLRESY | C3 | ||||
Guadua sp. | LEGDPYLKQRLRLRESY | C3 | Bambusoideae (BOP clade)p | Christin, et al.69 | |
LESDPYLRQRLMLRDSY | C3 | ||||
Brachypodium | Refer Table 2 | C3 | Pooideae (BOP clade)p | 35q | |
Triticeae | Refer Table 2 | ? | 11.6q | ||
Alloteropsis spp. | LEGDPYLKEGLRLRNPY | C4b | Panicoideae (PACMAD clade)p | 20-27q | Christin, et al.69 |
LEGDPYLKQQLRLRDPY | C4c | ||||
LEGSPGLKQRLRLRDPY | C3d | ||||
LEGDPYLKQRLRLRESY | C3e | ||||
LEGDPYLKQRLRIRDSY | C3f | ||||
LEGDPYLKQRLRLRDAY | C3g | ||||
LEGGPYLKQRLRLRDPY | C3h | ||||
LEGDLYLKQRLRLRDAY | C3i | ||||
LEGDPYLKQRLRLRDPY | C3j | ||||
Panicum spp. | LEGDPFLKQSLRLRNPY | C4k | Panicoideae (PACMAD clade)p | 18-27q | Christin, et al.70 Christin, et al.69 |
LEGDPYLKQGLRLRNPY | C4l | ||||
LEADPFLKQSLRLRNPY | C4m | ||||
LEGDLYLKQRLRLRDAY | C3n | ||||
LEGDPYLKQRLRLRDPY | C3o | ||||
Setaria italica | LESDPGLKQQLRLRDPY | C4 | Panicoideae (PACMAD)p | 16-27q | Bennetzen, et al.71 Christin, et al.69 |
LEGDPYLKQRLRLRESY | C3 | ||||
LESDPGLQQQLMLRDSY | C3 | ||||
LEGDLYLKQRLRLRDAY | C3 | ||||
LEGDPYLKQRLRIRDSY | C3 | ||||
Zea mays | LEGDPFLKQGLVLRNPY | C4 | Panicoideae (PACMAD)p | 16q | Schnable, et al.72 |
LEGDLYLKQRLRLRDAY | C3 | ||||
LEGDPYLKQRLRIRDSY | C3 | ||||
LEGDPYLKQRLRLRESY | C3 | ||||
Sorghum bicolor | LEGDPYLKQGLRLRNPY | C4 | Panicoideae (PACMAD)p | 13q | Paterson, et al.73 |
LEGDLYLKQRLRLRDAY | C3 | ||||
LEGDPYLKQRLRIRDSY | C3 | ||||
LEGDPYLKQRLRLRESY | C3 | ||||
LEGDPYLKQRLRLRDAY | C3 | ||||
Amaranthus hypochondriacus | LDADPYLKQILRLRDPY | C4 | Dicot | - | ADO15315 (Accession number) |
aSpecies arranged in the order of evolution except Amaranthus; PA: Picea abies; AS: Abies sibiria; GG: Gnetum gnemon; JC: Juniperus communis; PS: Pinus sylvestris; TB: Taxus baccata; Oryza sativa: includes indica and japonica; Alloteropsis spp.: A. cimicinad-g, A. angustac,f,g,i, A. semialata subsp semialatab,f-i, A. s. subsp ecklonianag,i,j; Panicum spp.: P. bisulcatumn, P. capillarel, P. coloratuml, P. fluviicolal, P. laetumk,m, P. miliaceumk,l, P. millegranao, P. phragmitoidesl, P. turgiduml.
pSoreng, et al.56.
qChalupska, et al.57.