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. 2016 Jul 27;113(32):9009–9014. doi: 10.1073/pnas.1603059113

Table S2.

Residue variety (%) by amino acid position generated using ConSurf for residues lining the substrate binding cleft (Methods)

PP5 amino acid Ala Cys Asp Glu Phe Gly His Ile Leu Met Asn Pro Gln Arg Ser Thr Val Trp Tyr Maximum, % identity/similarity
PP5 family*
 R275 100 R 100.000
 N308 7.246 1.449 62.319 4.348 18.841 4.348 1.449 N 62.319
 M309 100 M 100.000
 I312 49.275 1.449 46.377 2.899 I/M/V 98.511
 Y313 100 Y 100.000
 P375 1.449 98.551 P 98.551
 P376 1.449 98.551 P 98.551
 W386 1.449 98.551 W 98.551
 R400 100 R 100.000
 E428 100 E 100.000
 V429 1.471 1.471 97.059 V 97.059
 Y451 100 Y 100.000
PPP superfamily
 R275 100 R 100.000
 N308 20.69 5.747 39.08 31.034 1.149 1.149 1.149 Q 39.080
 M309 1.149 67.816 20.69 10.345 I/L/M 98.851
 I312 34.483 5.747 39.08 20.69 I/M/V 79.31
 Y313 20.69 79.31 Y 79.310
 P375 14.943 29.885 55.172 I/V 70.115
 P376 100 P 100.000
 W386 100 W 100.000
 R400 100 R 100.000
 E428 32.184 67.816 Q/E 100.00
 V429 20.69 1.149 40.23 37.931 L/V 78.161
 Y451 100 Y 100.000

Numbering is the same as for PP5 catalytic domain.

*

In total, 69 homologs were identified using BLAST with identity greater than 56% throughout both the TPR and catalytic domains.

In total, 87 homologs were identified using UniProt (>10 homologs for each of the PPP family members). The exception is PP7, for which only Arabidopsis was included.