Table 2.

Phylogenetic MCMC-GLMMs

Model	SWs*
µ ∼ indels + gene loss + pt size + lifestyle	0.334
µ ∼ GR + gene loss + pt size + lifestyle	0.270
µ ∼ indels + gene loss + pt size	0.157
dS ∼ GR + gene loss + pt size + lifestyle	0.255
dS ∼ indels + gene loss + pt size + lifestyle	0.225
dS ∼ indels + gene loss + pt size	0.142
dS ∼ GR + pt size + lifestyle	0.092
dN ∼ indels + gene loss + pt size + lifestyle	0.388
dN ∼ GR + gene loss + pt size + lifestyle	0.276
dN ∼ indels + gene loss + pt size	0.147
dN, dS ∼ indels + gene loss + pt size	0.346
dN, dS ∼ GR + pt size + lifestyle	0.213
dN, dS ∼ indels + pt size + lifestyle	0.145
ω ∼ indels	0.617
ω ∼ indels + lifestyle	0.247

GR, genome rearrangements based on locally collinear blocks; µ, total rate, pt, plastome.

^*Calculated separately over the set of models per response variable(s), and only models with a cumulative weight of 0.7 are shown.