Table 3.
qPCR primer sequences and characteristics
| Gene | Accesion no. | Primer source | Primer sequence (5′ → 3′) | Orientation | Tm (°C) | Amplicon lenght (bp) | References |
|---|---|---|---|---|---|---|---|
| TNF-α | NM_214022 | Pig | ACTGCACTTCGAGGTTATCGG | forward | 60 | 118 | [54] |
| GGCGACGGGCTTATCTGA | reverse | 60 | |||||
| IL-8 | NM_213867.1 | Pig | GCTCTCTGTGAGGCTGCAGTTC | forward | 58 | 79 | [54] |
| AAGGTGTGGAATGCGTATTTATGC | reverse | 54 | |||||
| IL-6 | NM_214399 | Pig | GGCAAAAGGGAAAGAATCCAG | forward | 57 | 87 | [54] |
| CGTTCTGTGACTGCAGCTTATCC | reverse | 61 | |||||
| IL-1β | NM_214055 | Pig | ATGCTGAAGGCTCTCCACCTC | forward | 62 | 89 | [55] |
| TTGTTGCTATCATCTCCTTGCAC | reverse | 59 | |||||
| IL-10 | NM_214041.1 | Pig | GGCCCAGTGAAGAGTTTCTTTC | forward | 54 | 51 | [54] |
| CAACAAGTCGCCCATCTGGT | reverse | 55 | |||||
| NFkB1 | NM_001048232.1 | Pig | TCGCTGCCAAAGAAGGACAT | forward | 54 | 101 | [55] |
| AGCGTTCAGACCTTCACCGT | |||||||
| GAPDH | NM_001206359.1 | Pig | ACTCACTCTTCTACCTTTGATGCT | forward | 49 | 100 | [54] |
| TGTTGCTGTAGCCAAATTCA | reverse | 56 | |||||
| B-actina | NM_213978.1 | Pig | GGACTTCGAGCAGGAGATGG | forward | 60 | 230 | [56] |
| GCACCGTGTTTGCGTAGAGG | reverse | 62 |