Figure 3.

Mapping and comparison of normal hiPSC and iPS-CC1 cells with sSOM.

Notes: (A) Gene expression patterns analyzed by sSOM with the microarray data of 201B7 (GSM241846) and iPS-CC1. The data were used 598 genes, which were extracted by the two parameters (see Fig. 1). Each of iPS-CC1 was mapped as a sphere by sSOM analysis. The normalized intensities of 323 upregulating genes (b) or 275 downregulating genes (C) in iPS-CC1, which were compared to GSM241846, were analyzed by sSOM. Ten genes close to the IP were aligned by the order of NSD as listed in Tables 2 and 3. Graphs were depicted as mean + SD. Normalized intensity i’ was shown in base-2 logarithm on Y-axis. Y-linked genes were eliminated from the list because sex differences were confounding factor.