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. 2016 Aug 17;11(8):e0159954. doi: 10.1371/journal.pone.0159954

Table 1. The detail information of the six Oncomine datasets.

Dataset Name Study Description Array Types Experiment Type
Gaedcke Colorectal Dataset Sixty-five (65) rectal adenocarcinomas and their paired normal rectal mucosa samples were analyzed. [20] Agilent Human Genome 44K,Measured 19,189 genes, 41,000 reporters. mRNA
Skrzypczak Colorectal 2 Dataset Forty (40) microdissected samples (5 replicates each of 8 types of epithelial or mucosa cells from tumor or normal tissues) were analyzed. [21] Human Genome U133 Plus 2.0 Array, Measured 19,574 genes, 54,675 reporters. mRNA
Kaiser Colon Dataset One hundred (100) colorectal carcinoma and 5 normal colon samples were analyzed. [22] Human Genome U133 Plus 2.0 Array, Measured 19,574 genes, 54,675 reporters. mRNA
TCGA Colorectal Dataset One hundred forty-six (146) colon adenocarcinoma, 69 rectal adenocarcinoma, 19 paired normal colon, and 3 paired normal rectum tissue samples were analyzed. [23] Platform not pre-defined in Oncomine, Measured 20,423 genes, 111,123 reporters. mRNA
Bittner Colon Dataset Three-hundred seventy-three (373) colorectal carcinoma samples were analyzed. Human Genome U133 Plus 2.0 Array, Measured 19,574 genes, 54,675 reporters. mRNA
Ki Colon Dataset One hundred and three (103) matched samples from 27 colorectal cancer patients were analyzed. [24] Platform not pre-defined in Oncomine, Measured 9,256 genes, 15,783 reporters. mRNA