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. 2016 Mar 8;10(9):2209–2222. doi: 10.1038/ismej.2016.16

Table 2. Diversity estimates of the microbial communities at different locations and units at investigated waterworks.

Water works Unit Zone Number of sequencesa Observed OTUsb Richness estimates
Evenness Diversity
          Singleton OTUs0.03s Chao1 ACE GiniCoff H
DWTP1 GW   6758 372 192 1005 890 0.841 8.5±0.02
  PF Top 12 050±2396 322±4 175±3 546±81 641±99 0.890±0.01 4.1±0.18
    Depth 12 414±3826 361±10 193±34 604±130 742±159 0.881±0.01 4.2±0.24
  AF Top 13 908±787 439±66 257±56 779±130 909±161 0.862±0.01 4.8±0.17
    Depth 14 361±1988 497±69 296±47 959±155 1100±178 0.855±0.01 4.8±0.40
                   
DWTP2 GW   6392 1105 772 3046 3352 0.683 6.1±0.03
  PF Top 7738±553 393±47 284±31 1142±182 1337±182 0.895±0.01 4.3±0.20
    Depth 7113±622 406±30 286±26 1406±59 1410±97 0.888±0.01 4.5±0.05
  AF Top 9869±3891 512±45 340±49 1361±362 1525±330 0.862±0.01 4.6±0.09
    Depth 11 757±4330 480±62 301±71 1275±473 1371±505 0.868±0.01 4.5±0.02
                   
DWTP3 GW   18746 863 527 1695 1895 0.775 6.8±0.04
  PF Top 6803±1332 470±69 343±55 1639±302 1719±336 0.929±0.01 3.1±0.60
    Depth 6988±751 564±50 427±58 1893±233 2241±401 0.879±0.04 3.3±0.43
  AF Top 6406±1228 802±81 589±79 2694±494 3008±520 0.721±0.03 7.6±0.01
    Depth 6803±1332 784±105 590±114 2580±591 2973±708 0.716±0.03 7.5±0.41
                   
DWTP4 GW   16 480 1169 676 2170 2373 0.667 8.6±0.03
  PF Top 6397±930 239±45 161±39 750±202 770±296 0.879±0.01 4.0±0.37
    Depth 7498±888 357±42 258±34 1222±165 1311±236 0.852±0.01 4.6±0.26
  AF Top 6880±952 1106±192 850±184 4368±1194 4932±1526 0.784±0.02 6.4±0.08
    Depth 6390±782 1104±176 844±164 4599±1715 5013±1689 0.792±0.01 6.3±0.47
                   
DWTP5 GW   16 648 962 593 1808 2183 0.735 7.5±0.03
  AF Top 8084±740 343±68 241±45 1131±317 1233±354 0.909±0.01 3.4±0.36
    Depth 7650±1026 562±181 422±142 1913±742 2136±853 0.859±0.04 4.6±1.02

Abbreviations: ACE, abundance-based coverage estimator; AF, after-filter; DWTP, drinking water treatment plant; Gcoff, Gini coefficient; GW, groundwater; H, shannon index; OTU, operational taxonomic unit; PF, prefilter.

All sample sizes were equalized at 4000 sequences. Standard deviations (±) were obtained from biological replicates; standard deviations in the top and bottom layers were assessed from triplicate samples from the same filter. GW samples were taken as individual samples.

a

Numbers of sequences in PF and AF rows show the total amount of high-quality sequences that were obtained from 10 ng of DNA extracted from 0.5 g of drained wet sand grains. Mean values were calculated by grouping the samples according to zones, units and waterworks.

b

OTU calculations were carried out at 97% phylogenetic similarity.