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. Author manuscript; available in PMC: 2016 Aug 18.
Published in final edited form as: J Biomed Inform. 2015 Jul 28;58(Suppl):S11–S19. doi: 10.1016/j.jbi.2015.06.007

Table 2.

i2b2-PHI categories: micro- and macro-averaged entity-based evaluation. The micro-F1 scores are bolded, as they are the primary evaluation metric for this task.

Rank Team Name Micro-
averaged
Precision
Micro-
averaged
Recall
Micro-
averaged F1
Macro-
averaged
Precision
Macro-
averaged
Recall
Macro-
averaged
F1
1 University of Nottingham 0.9645 0.9092 0.9360 0.9653 0.9156 0.9398
2 Harbin Institute of Technology: Shenzhen Graduate School 0.9264 0.8988 0.9124 0.9282 0.9091 0.9185
3 University of Manchester 0.9306 0.8836 0.9065 0.9341 0.893 0.9131
4 Harbin Institute of Technology 0.9229 0.8505 0.8852 0.9228 0.8576 0.889
5 Kaiser Permanente 0.8731 0.7700 0.8183 0.8727 0.7627 0.814
6 LIMSI–CNRS 0.8937 0.7332 0.8055 0.8909 0.7272 0.8007
7 Memorial University of Newfoundland 0.7944 0.7191 0.7549 0.7963 0.7259 0.7595
8 East China Normal University 0.9344 0.4288 0.5878 0.9215 0.3951 0.5531
9 California State University San Marcos 0.7628 0.3526 0.4823 0.7217 0.3235 0.4467
10 UC San Diego 0.5271 0.3825 0.4433 0.5662 0.4011 0.4696