Table 1.
Loci showing significant reduction in variability in the contact zone sample, as compared to allopatric samples
| PrimerI D | lnRH Contact/Close allopatry | lnRH Close/Distant allopatry | Cluster | Chr | msStart | Closest MUP or VR gene§ | Distance to closest MUP or VR gene (bp) | Second closest MUP or VR gene§ | Distance to 2nd closest MUP or VR gene (bp) | Closest other gene§ | Distance to closest other gene (bp) |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1178 | -1.745 | 2.092 | 36VR | 13 | 2.2E+07 | Vmn1r198 | 9842 | Vmn1r197 | 15697 | - | - |
| 2294 | -3.256 | -0.45 | 43VR | 17 | 5.8E+07 | Vmn2r120 | 29736 | - | - | hormone receptor-like sequence 1 [MGI:106912] | 0 |
| 2963 | -1.638 | -0.578 | 16VR | 6 | 5.8E+07 | Vmn1r-ps14 | 2547 | Vmn1r26 | 43192 | - | - |
| 3082 | -2.571 | 0.611 | 19VR | 6 | 1.2E+08 | Vmn2r25 | 65535 | - | - | - | - |
| 3111 | -4.156 | -1.414 | 19VR | 6 | 1.2E+08 | Vmn2r19 | 20462 | Vmn2r20 | 28094 | - | - |
| 4249 | -1.682 | -1.02 | 27VR | 7 | 5E+07 | none | - | - | - | predicted gene 5594 :MGI:3648693] | 7026 |
| 5064 | -1.626 | 1.117 | 29VR | 7 | 9.3E+07 | Vmn2r78 | 29687 | - | - | - | - |
| 6868 | -1.727 | 1.273 | 05VR | 2 | 1.8E+08 | none | - | - | - | predicted gene 14496 [MGI:3769929] | 11959 |
| 10673 | -4.666 | 1.182 | 50MU P | 4 | 6.1E+07 | Mup-ps15 | 20303 | Mup19 | 56447 | - | - |
| 12214 | -3.512 | -2.394 | 23VR | 7 | 1.2E+07 | Vmn1r56 | 6129 | - | - | zinc finger protein 606 [MGI:1914620] | 0 |
| 13005 | -1.907 | -1.56 | 23VR | 7 | 1.4E+07 | none | - | - | - | RIKEN cDNA 6330408A02 gene [MGI:2447816] | 0 |
| 14326 | -1.791 | 0.057 | 16VR | 6 | 5.7E+07 | Vmn1r4 | 0 | - | - | - | - |
| 14363 | -1.648 | 0.158 | 16VR | 6 | 5.7E+07 | Vmn1r4 | 58069 | - | - | 5'-nucleotidase, cytosolic III [MGI:1927186] | 0 |
| 16498 | -3.018 | -1.158 | 16VR | 6 | 5.8E+07 | Vmn1r28 | 6403 | Vmn1r-ps19 | 15513 | - | - |
| 18685 | -1.836 | 1.036 | 27VR | 7 | 5E+07 | Vmn2r63 | 21900 | - | - | predicted pseudogene 9294 [MGI:3648888] | 123 |
| 18813 | -1.727 | -0.125 | 20VR | 7 | 5151633 | Vmn1r56 | 3284 | Vmn1r57 | 20434 | - | - |
| 19022 | -2.356 | 1.944 | 29VR | 7 | 9.3E+07 | Vmn2r76 | 47207 | - | - | predicted gene 20480 [MGI:5141945] | 5236 |
§: within a 80kb distance up or downstream of each microsatellite
Chr: chromosome; msStart: microsatellite start coordinate.