Table 3.
Samples used in the study.
DNA METHYLATION ANALYSIS |
GENE EXPRESSION ANALYSIS |
||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
In silico analysis |
In silico analysis |
||||||||||||
Gene expression analysis |
Demethylation study |
||||||||||||
MethylCap-seq | Bisulfite sequencing validation18 | Methylation array analysis28 | GSE37364 | GSE8671 | GSE18105/GSE32323 | GSE22242 | GSE9348 | GSE29060 | GSE32323 | GSE14526 | GSE41588 | ||
TISSUE | NAT/N | 6 | 15 | 24 | 38 | 32 | 17 | 4 | 12 | ||||
AD | 15 | 15 | 32 | 29 | 32 | 3 | |||||||
CRC | 9 | 15 | 64 | 27 | 17 | 7 | 70 | ||||||
CELL LINE | HT29 | + | + | + | |||||||||
RKO | + | ||||||||||||
SW480 | + | + | |||||||||||
HCT116 | + | + | |||||||||||
COLO320 | + |