Table 2. Up-regulated genes annotated as DNA helicases.
| Fold change | V3.3 ID | Arabidopsisorthologue | Fold change (Arabidopsis) | Functional annotation |
|---|---|---|---|---|
| 25x | Pp3c1_29170V3.1 | AT4G25120 | 1.4x down | ATP-dependent DNA helicase similar to yeast SRS2 PpSRS2 |
| 16x | Pp3c10_6710V3.1 | AT2G44980 | 1.1x down | Alc1-like SNF2 family DNA- dependent ATPase/helicase |
| 13x | Pp3c8_17910V3.1 | none | - | SNF2 family DNA-dependent ATPase/helicase Rad54B |
| 11x | Pp3c15_23590V3.1 | AT2G18760 | 6.7x up | ERCC6-like SNF2 helicase PpERCC6 |
| 11x | Pp3c5_12930V3.1 | At4G32700 | 1.1x down | Tebichi ortholog: polymerase with DEAD/DEAH box and polymerase theta helicase domains PpTEB |
| 11x | Pp3c1_13308V3.1 | AT5G07810 | 1.4x down | SNF2-related DNA Helicase/endonuclease PpZRL |
| 8x | Pp3c20_11500V3.1 | AT2G13370 | 1.2x down | SNF2 family chromodomain-helicase PpCHD5 |
| 6x | Pp3c18_12550V3.1 | AT1G79950 | No change (1x) | RTEL1-like helicase PpRTEL |
| 5x | Pp3c10_16570V3.1 | AT1G03190 | 1.2x down | ERCC2-like helicase PpERCC2 |
Up-regulated P. patens helicases compared with the DNA-damage (100Gy γ-irradiation) induced changes in expression of their orthologues in wild-type A. thaliana, as reported by Culligan et al. [38].