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. 2011 Jun 16;28(11):3171–3181. doi: 10.1093/molbev/msr153

Table 2.

Performance of old and new likelihood calculations for several combinations of N, μ, and s.

Default Method
New Method
Population size (N) θ Ns MPE Fraction containing true value MPE Fraction containing true value
500 0.01 0 470 (93) 0.98 537 (185) 0.87
500 0.01 10 317 (65) 0.14 475 (192) 0.96
500 0.05 20 187 (38) 0.0 387 (116) 0.94
1000 0.01 0 980 (233) 0.95 1088 (343) 0.87
1000 0.01 10 647 (137) 0.2 1019 (356) 0.97
1000 0.025 20 486 (104) 0.0 922 (280) 0.95
1000 0.05 25 365 (68) 0.0 804 (225) 0.9
2500 0.025 0 2578 (515) 0.95 2880 (830) 0.87
2500 0.025 10 1270 (283) 0.0 2443 (884) 0.96
2500 0.025 25 1315 (243) 0.0 1902 (701) 1
5000 0.05 10 2635 (557) 0.0 5055 (1711) 0.97
5000 0.025 25 2467 (501) 0.0 4221 (1481) 0.98

MPE, Maximum a posteriori estimate. Fraction containing true value indicates the fraction of data sets in which the 95% CPD contained the true population size.