Table 2.
Correlation between miR399 and potential target genes
| miRNA | Target | Function description of targeta | PCCb | Target scorec | Cluster IDd |
|---|---|---|---|---|---|
| miR399a | AtPT1 | Inorganic phosphate transporter 1–1 | -0.72 | 5 | 3 |
| miR399a | SMXL5 | Clp amino terminal domain-containing protein | -0.72 | 5 | 1 |
| miR399a | ECT2 | Physically interacts with CIPK1. | -0.71 | 4.5 | 3 |
| miR399a | AtCS-C | Dehydratase epimerase/racemase deaminase | -0.70 | 4.8 | 2 |
| miR399a | TIP4;1 | Aquaporin TIP4-1, transporter | -0.68 | 4.8 | 3 |
| miR399a | AtPT2 | Inorganic phosphate transporter 1-2 | -0.67 | 5 | 1 |
| miR399a | SPPL5 | Signal peptide peptidase-like 5, aspartic protease | -0.67 | 5 | 6 |
| miR399a | AtSCAR4 | Protein SCAR4 | -0.62 | 5 | 6 |
| miR399a | AtPP2-A5 | Protein PHLOEM PROTEIN 2-LIKE A5 | -0.59 | 4 | 6 |
| miR399a | AT3G18620 | DHHC-type zinc finger family protein | -0.59 | 4.8 | 3 |
| miR399a | AtCFM2 | Involved in group I and group II intron splicing. | -0.59 | 4.5 | 6 |
| miR399a | AT1G61860 | Protein kinase family protein | -0.58 | 4.8 | 3 |
| miR399a | AT2G31150 | ATP binding / ATPase | -0.58 | 5 | 6 |
| miR399a | AT3G44820 | Phototropic-responsive NPH3 family protein | -0.58 | 4.8 | 3 |
| miR399a | IPGAM1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 | -0.57 | 5 | 3 |
| miR399a | AT2G25420 | mRNA splicing factor esterase kinase inhibitor | -0.57 | 4 | 6 |
| miR399a | AtOPR1 | 12-oxophytodienoate reductase 1 | -0.57 | 4.8 | 3 |
| miR399a | AT4G19520 | TIR-NBS-LRR class disease resistance protein | -0.56 | 5 | 6 |
| miR399a | OZS2 | Pectinesterase/pectinesterase inhibitor 3 | -0.55 | 4.8 | 3 |
| miR399a | AT2G38740 | Phosphatase | -0.55 | 4.5 | 2 |
| miR399a | BLH1 | BEL1-like homeodomain protein 1 | -0.53 | 4.2 | 3 |
| miR399a | TGA7 | Transcription factor TGA7 | -0.51 | 5 | 3 |
| miR399a | AT1G61590 | Protein kinase superfamily protein | -0.51 | 4.8 | 3 |
| miR399a | CYP705A30 | Cytochrome P450, family 705, subfamily A, polypeptide 30 | -0.44 | 2 | 3 |
| miR399a | PHO2 | Mediates degradation of PHO1 and PHT1s | -0.37 | 0.8 | / |
| miR399a | NF-YA10 | Nuclear transcription factor Y subunit A-10 | -0.10 | 2.5 | 1 |
| miR399d | XLOC_001691 | / | -0.74 | 5 | 1 |
| miR399b | XLOC_026270 | / | -0.68 | 5 | 6 |
| miR399e | XLOC_013661 | / | -0.64 | 5 | 2 |
| miR399b | XLOC_013840 | / | -0.63 | 4.5 | 6 |
| miR399e | XLOC_026270 | / | -0.62 | 4.5 | 6 |
| miR399e | XLOC_003248 | / | -0.60 | 5 | 3 |
| miR399e | XLOC_001806 | / | -0.59 | 4.8 | 5 |
| miR399a | XLOC_018338 | / | -0.58 | 4.5 | 5 |
| miR399d | XLOC_027498 | / | -0.58 | 4.8 | 6 |
| miR399d | XLOC_010238 | / | -0.57 | 4.8 | 3 |
| miR399c-5p | XLOC_019368 | / | -0.57 | 5 | 4 |
| miR399c-3p | XLOC_016349 | / | -0.53 | 4 | 6 |
| miR399b | XLOC_020833 | / | -0.53 | 5 | 3 |
| miR399a | XLOC_008029 | / | -0.51 | 5 | 6 |
| miR399c-3p | XLOC_005358 | / | -0.50 | 4.8 | 6 |
| miR399f | XLOC_026270 | / | -0.50 | 4.5 | 6 |
Note:
aColumn3 describes functions of targeted genes of miR399
bPCC refers the expression correlation of miR399 and its target genes
cTarget score is the target match score calculated by psRobot, and lower target score represents better base pair match between miRNA and targets
dThe last column indicates the cluster that target genes or lncRNAs belonging to