Table 4. Summary of analyses, model choice, partitioning, and support for major clades in the resulting topologies.
| Analysis | Reference | Model(s) | Partitioned | Cervidae | Cervinae | Cervini | Muntiacini | Capreolinae | Capreolini | Odocoileini | Blastocerina | Odocoileina |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BI-mtG | Fig. 3A, Fig. S1 | GTR | Y | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| BI-1140-unpart | Fig. 3B, Fig. 4, Fig. S2 | GTR | N | 1 | 1 | 1 | 1 | – | 1 | .84 | .98 | .99 |
| BI-1140-part | Fig. 3C, Fig. S3 | SYM | Y | 1 | .99 | 1 | 1 | – | 1 | – | .75 | .87 |
| HKY | ||||||||||||
| GTR | ||||||||||||
| ML-1140 | Fig. 3D, Fig. S4 | GTR | N | 99 | 89 | 99 | 92 | – | 100 | 57 | 55 | 41 |
| BI-747-unpart | Fig. 3E, Fig. S5 | GTR | N | 1 | 1 | 1 | .81 | – | 1 | – | .85 | – |
| BI-747-part | Fig. 3F, Fig. S6 | SYM | Y | 1 | .99 | 1 | .90 | – | 1 | – | – | – |
| HKY | ||||||||||||
| GTR | ||||||||||||
| BI-569-unpart | Fig. 3G, Fig. S7 | GTR | N | 1 | – | .99 | .92 | – | 1 | – | – | – |
Notes.
Abbreviations:
- BI
- Bayesian Inference
- ML
- Maximum Likelihood, the number represents the Cytb sequence length in the current alignment
- Y
- yes
- N
- no
- part
- partitioned
- unpart
- unpartitioned
The values within cells represent the node support for the respective split either as Bayesian posterior probabilities or as bootstrap support from maximum likelihood analyses; “–” indicates that the clade was not recovered in the respective analysis.