Table 3.
Number and diversity of simple sequences repeats (SSRs) in Galgal4
| SSRs type | Number of arrays | Number of different repeated unitsa | % coverage in galGal4 | |
|---|---|---|---|---|
| Simple Repeat (stretches of A or T, and C or G)b | 204434 | 2 | PolyA : 0.355 PolyC : 0.022 |
|
| Microsatellite [2–10] bpb, c | 770202 | 2101 | 2.189 | |
| Minisatellite [11–60]bpb, c | 12310 | 123 | 1.273 | |
| Tandem arrays [>60] bpd | Large tandem repeats | 6 | 6 | 0.003 |
| Satellite DNAs | 10136 | 9987 | 0.238 | |
athe threshold used to gather two repeated unit is a sequence similarity of 100 %; bthe minimal size for an array is 50 repeated units; cbetween brackets are indicated the size of the repeated unit of each SSR type; dthe minimal size for an array is 2 to 50 repeated units of large tandem repeats et 51 to ∞ for a satellite DNA