Table 4.

Mapping of assembed Spartina alterniflora transcripts onto rice genome v7.1 (downloaded from rice genome project)

Rice chromosome	Total unique hits of unigenes	Total unigenes spanning rice chromosome	Total no. of genes on rice chromosome	% rice genes covered in rice chromosome	% unigenes covered
Os1	19,652	2898	6529	44.38	7.18
Os2	15,547	2418	5377	44.96	5.68
Os3	17,996	2717	5568	48.79	6.58
Os4	11,413	1968	5317	37.01	4.17
Os5	10,648	1791	4572	39.17	3.89
Os6	10,488	1768	4709	37.54	3.83
Os7	9873	1646	4450	36.98	3.61
Os8	8855	1527	4188	36.46	3.23
Os9	9380	1256	3407	36.86	3.43
Os10	7457	1187	3510	33.81	2.72
Os11	6101	1281	4160	30.79	2.23
Os12	8066	1435	4014	35.74	2.94
Total	135,476	21,892	55,801	39.23	49.54