Table 5.
Analysis of microsatellite markers in Spartina alterniflora unigenes
| LC | LS | RC | RS | Total | |
|---|---|---|---|---|---|
| Total no. of sequences analyzed | 73,552 | 68,346 | 72,199 | 59,363 | 273,460 |
| Total size of sequences analyzed (Mbp) | 30.34 | 30.29 | 23.82 | 21.02 | 105.48 |
| Number of SSR containing sequences | 3209 | 3188 | 1818 | 1242 | 9457(3.45 %) |
| Total number of identified SSR | 3685 | 3654 | 2115 | 1351 | 10805 |
| Number of sequences containing more than 1 SSR | 334 | 343 | 175 | 68 | 920 |
| Frequency of SSR found | 1/9.76 kb | ||||
| Dinucleotide SSR | 599 | 668 | 588 | 382 | 2237 (20.7 %) |
| Trinucleotide SSR | 1378 | 1341 | 496 | 289 | 3504(32.42 %) |
| Tetranucleotide SSR | 13 | 25 | 43 | 9 | 90(0.83 %) |
| Pentanucleotide SSR | 8 | 12 | 8 | 10 | 38(0.35 %) |
| Hexanucleotide SSR | 12 | 10 | 8 | 11 | 41(0.37 %) |