Table 2.

Reconstruction of individual genomes from a low-complexity pyrene degrading bacterial consortium using the coverage-based clustering module (AB-Cl) for sequence pre-assembly

Abundance class (Bin #)	Number of classified reads	Bin coverage estimate	% Binned reads mapped on reconstructed genome	% Total reads mapped on reconstructed genome	Genomes in given bin (% binned sequences mapped to it)
Bin I	168591494	1389	82 %	76,52 %	Bordetella (82 %)
Bin II	9445028	51	97 %	5,12 %	Mycobacterium (97 %)
Bin III	1870808	19	98 %	1,04 %	Stenotrophomonas (72 %), Sphingopyxis (22 %), Mycobacterium (3 %)
Bin IV	1331276	11	98 %	0,83 %	Sphingopyxis (76 %), Stenotrophomonas (19 %), Bordetella (3 %)

The completeness of the reconstructed genomes was assessed using lineage specific marker genes with CheckM [19], and yielded completeness estimates ranging from 97 to 99 %, with less than 2 % contamination and negligible strain level heterogeneity. Derived from Adam I.K. et al., under review