Table 2.
Comparison of the expression of apoptosis-effector genes in the samples representing the high oncoprotein mutation barcodes vs. randomly selected barcodes having no oncoprotein mutations. (See SOM file labeled, “SOM STAD, apoptosis.”).
| Barcodes w/ high oncoprotein mutations | Barcodes w/ no oncoprotein mutations SET 1 | Barcodes w/ no oncoprotein mutations SET 2 | Barcodes w/ no oncoprotein mutations SET 3 | |
|---|---|---|---|---|
| TCGA-BR-8680 | TCGA-HU-A4G3 | TCGA-BR-A4IU | TCGA-D7-8570 | |
| TCGA-BR-6452 | TCGA-D7-6818 | TCGA-BR-6801 | TCGA-IN-8462 | |
| TCGA-VQ-A8P2 | TCGA-CD-5800 | TCGA-BR-A4J7 | TCGA-FP-A9TM | |
| TCGA-CG-5721 | TCGA-IN-A6RS | TCGA-CD-5798 | TCGA-MX-A663 | |
| TCGA-BR-8487 | TCGA-HU-A4GP | TCGA-BR-8590 | TCGA-BR-8373 | |
| TCGA-FP-A4BE | TCGA-BR-8291 | TCGA-RD-A8MW | TCGA-VQ-AA6B | |
| TCGA-CD-A4MG | TCGA-VQ-A92D | TCGA-CD-8530 | TCGA-BR-8683 | |
| TCGA-CG-5723 | TCGA-HU-A4H6 | TCGA-D7-8574 | TCGA-BR-A4CS | |
| TCGA-HU-8602 | TCGA-CD-8534 | TCGA-CD-5799 | TCGA-D7-8579 | |
| TCGA-BR-8361 | TCGA-BR-8384 | TCGA-BR-8367 | TCGA-BR-A4IV | |
| TCGA-BR-8363 | TCGA-BR-8364 | TCGA-BR-8289 | TCGA-D7-A6F0 | |
| TCGA-BR-8589 | TCGA-CG-5724 | TCGA-ZA-A8F6 | TCGA-RD-A8N9 | |
| TCGA-D7-A4YX | TCGA-HU-8604 | TCGA-BR-8588 | TCGA-BR-A4CR | |
| Average apoptosis gene expression (Avg. RPKM) | 100.09 | 70.57 | 70.93 | 54.91 |
| P-value comparison of SET # vs. high oncoprotein mutation group | N/A | 0.018 | 0.018 | 7.76E-05 |