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. 2016 Jul 21;5:e16793. doi: 10.7554/eLife.16793

Table 2.

16 s rDNA homology of emergent bacterial strains.

DOI: http://dx.doi.org/10.7554/eLife.16793.007

Planarian source Colony morphology Top 10 sequence hits Max score Total score Query cover E value Ident Accession
Sexual strain S2F2 Large White Hafnia paralvei strain ATCC 29927 16 sribosomal RNA gene, partial sequence 1991 1991 98% 0 96% NR_116898.1
Obesumbacterium proteus strain 42 16 s ribosomal RNA gene, partial sequence 1932 1932 98% 0 96% NR_025334.1
Hafnia alvei strain JCM 1666 16 s ribosomal RNA gene, partial sequence 1927 1927 98% 0 96% NR_112985.1
Obesumbacterium proteus strain NCIMB 8771 16 s ribosomal RNA gene, partial sequence 1927 1927 98% 0 95% NR_116603.1
Hafnia alvei strain ATCC 13337 16 s ribosomal RNA gene, complete sequence 1917 1917 98% 0 95% NR_044729.2
Ewingella americana strain CIP 81.94 16 s ribosomal RNA gene, complete sequence 1908 1908 93% 0 97% NR_104925.1
Rouxiella chamberiensis 16 s ribosomal RNA, partial sequence 1881 1881 93% 0 97% NR_135871.1
Hafnia psychrotolerans strain DJC1-1 16 s ribosomal RNA, partial sequence 1875 1875 93% 0 97% NR_134741.1
Serratia liquefaciens strain ATCC 27592 16 s ribosomal RNA gene, complete sequence 1871 1871 98% 0 95% NR_121703.1
Serratia grimesii strain DSM 30063 16 s ribosomal RNA gene, partial sequence 1871 1871 98% 0 95% NR_025340.1
Medium yellowish beige Pseudomonas peli strain R-20805 16 s ribosomal RNA gene, partial sequence 2002 2002 98% 0 97% NR_042451.1
Pseudomonas guineae strain M8 16 s ribosomal RNA gene, partial sequence 1953 1953 98% 0 96% NR_042607.1
Pseudomonas anguilliseptica strain S 1 16 s ribosomal RNA gene, partial sequence 1908 1908 98% 0 96% NR_029319.1
Pseudomonas cuatrocienegasensis strain 1N 16 s ribosomal RNA gene, partial sequence 1897 1897 98% 0 95% NR_044569.1
Pseudomonas pseudoalcaligenes strain Stanier 63 16 s ribosomal RNA gene, partial sequence 1868 1868 98% 0 95% NR_037000.1
Pseudomonas pseudoalcaligenes strain NBRC 14167 16 s ribosomal RNA gene, partial sequence 1866 1866 98% 0 95% NR_113653.1
Pseudomonas indoloxydans strain IPL-1 16 s ribosomal RNA gene, partial sequence 1866 1866 98% 0 95% NR_115922.1
Pseudomonas alcaligenes strain ATCC 14909 16 s ribosomal RNA gene, partial sequence 1864 1864 98% 0 95% NR_114472.1
Pseudomonas alcaligenes strain NBRC 14159 16 s ribosomal RNA gene, partial sequence 1864 1864 98% 0 95% NR_113646.1
Pseudomonas composti strain C2 16 s ribosomal RNA gene, partial sequence 1864 1864 98% 0 95% NR_116992.1
Small Beige with circle Vogesella mureinivorans strain 389 16 s ribosomal RNA gene, partial sequence 2039 2039 99% 0 97% NR_104556.1
Vogesella perlucida strain DS-28 16 s ribosomal RNA gene, partial sequence 2039 2039 99% 0 97% NR_044326.1
Vogesella amnigena strain Npb-02 16 s ribosomal RNA, partial sequence 1967 1967 99% 0 96% NR_137334.1
Vogesella oryzae strain L3B39 16 s ribosomal RNA gene, partial sequence 1934 1934 99% 0 95% NR_135212.1
Vogesella lacus strain GR13 16 s ribosomal RNA gene, partial sequence 1895 1895 99% 0 95% NR_116268.1
Vogesella fluminis strain Npb-07 16 s ribosomal RNA gene, partial sequence 1890 1890 99% 0 95% NR_109463.1
Vogesella indigofera strain ATCC 19706 16 s ribosomal RNA gene, complete sequence 1869 1869 99% 0 94% NR_040800.1
Vogesella alkaliphila strain JC141 16 s ribosomal RNA gene, partial sequence 1862 1862 99% 0 94% NR_108891.1
Gulbenkiania mobilis strain E4FC31 16 s ribosomal RNA gene, complete sequence 1805 1805 97% 0 94% NR_042548.1
Gulbenkiania indica strain HT27 16 s ribosomal RNA gene, partial sequence 1762 1762 97% 0 93% NR_115769.1
Sexual strain S2F2 Tiny White Carbophilus carboxidus strain Z-1171 16 s ribosomal RNA gene, complete sequence 1951 1951 98% 0 96% NR_104931.1
Aminobacter aminovorans strain DSM 7048 16 s ribosomal RNA gene, partial sequence 1951 1951 98% 0 96% NR_025301.1
Aminobacter lissarensis strain CC495 16 s ribosomal RNA gene, complete sequence 1945 1945 98% 0 96% NR_041724.1
Aminobacter niigataensis strain DSM 7050 16 s ribosomal RNA gene, partial sequence 1940 1940 98% 0 96% NR_025302.1
Aminobacter aganoensis strain TH-3 16 s ribosomal RNA gene, partial sequence 1940 1940 98% 0 96% NR_028876.1
Aminobacter anthyllidis strain STM4645 16 s ribosomal RNA gene, partial sequence 1934 1934 98% 0 96% NR_108530.1
Aminobacter ciceronei strain IMB-1 16 s ribosomal RNA gene, complete sequence 1929 1929 98% 0 96% NR_041700.1
Mesorhizobium australicum strain WSM2073 16 s ribosomal RNA gene, complete sequence 1882 1882 94% 0 96% NR_102452.1
Mesorhizobium qingshengii strain CCBAU 33460 16 s ribosomal RNA gene, partial sequence 1882 1882 94% 0 96% NR_109565.1
Mesorhizobium shangrilense strain CCBAU 65327 16 s ribosomal RNA gene, partial sequence 1882 1882 94% 0 96% NR_116163.1
Asexual strain CIW4 Small Beige with circle Vogesella perlucida strain DS-28 16 s ribosomal RNA gene, partial sequence 2167 2167 94% 0 97% NR_044326.1
Vogesella mureinivorans strain 389 16 s ribosomal RNA gene, partial sequence 2156 2156 94% 0 97% NR_104556.1
Vogesella lacus strain GR13 16 s ribosomal RNA gene, partial sequence 2019 2019 95% 0 95% NR_116268.1
Vogesella oryzae strain L3B39 16 s ribosomal RNA gene, partial sequence 2013 2013 95% 0 95% NR_135212.1
Vogesella fluminis strain Npb-07 16 s ribosomal RNA gene, partial sequence 2012 2012 94% 0 95% NR_109463.1
Vogesella indigofera strain ATCC 19706 16 s ribosomal RNA gene, complete sequence 1989 1989 94% 0 94% NR_040800.1
Vogesella alkaliphila strain JC141 16 s ribosomal RNA gene, partial sequence 1980 1980 94% 0 94% NR_108891.1
Gulbenkiania mobilis strain E4FC31 16 s ribosomal RNA gene, complete sequence 1884 1884 94% 0 93% NR_042548.1
Pseudogulbenkiania gefcensis strain yH16 16 s ribosomal RNA gene, partial sequence 1857 1857 95% 0 92% NR_118145.1
Aquaphilus dolomiae strain LMB64 16 s ribosomal RNA gene, partial sequence 1855 1855 94% 0 93% NR_118538.1
Medium Yellow Chryseobacterium lactis strain KC1864 16 s ribosomal RNA gene, partial sequence 2017 2017 98% 0 96% NR_126256.1
Chryseobacterium viscerum strain 687B-08 16 s ribosomal RNA gene, partial sequence 2012 2012 98% 0 95% NR_117206.1
Chryseobacterium tructae strain 1084-08 16 s ribosomal RNA gene, partial sequence 1995 1995 98% 0 95% NR_108531.1
Chryseobacterium oncorhynchi strain 701B-08 16 s ribosomal RNA gene, partial sequence 1995 1995 98% 0 95% NR_108481.1
Chryseobacterium ureilyticum strain F-Fue-04IIIaaaa 16 s ribosomal RNA gene, partial sequence 1980 1980 98% 0 95% NR_042503.1
Chryseobacterium indologenes strain NBRC 14944 16 s ribosomal RNA gene, partial sequence 1969 1969 98% 0 95% NR_112975.1
Chryseobacterium gleum strain NBRC 15054 16 s ribosomal RNA gene, partial sequence 1967 1967 98% 0 95% NR_113722.1
Chryseobacterium gleum strain CCUG 14555 16 s ribosomal RNA gene, partial sequence 1967 1967 98% 0 95% NR_042506.1
Chryseobacterium indologenes strain LMG 8337 16 s ribosomal RNA gene, partial sequence 1964 1964 98% 0 95% NR_042507.1
Chryseobacterium artocarpi strain UTM-3 16 s ribosomal RNA, partial sequence 1960 1960 98% 0 95% NR_134001.1
Asexual strain CIW4 Large Beige Pseudomonas fluorescens Pf0-1 strain Pf0-1 16 s ribosomal RNA, complete sequence 2242 2242 94% 0 99% NR_102835.1
Pseudomonas koreensis strain Ps 9-14 16 s ribosomal RNA gene, partial sequence 2220 2220 94% 0 98% NR_025228.1
Pseudomonas reinekei strain MT1 16 s ribosomal RNA gene, partial sequence 2217 2217 94% 0 98% NR_042541.1
Pseudomonas moraviensis strain 1B4 16 s ribosomal RNA gene, partial sequence 2215 2215 94% 0 98% NR_043314.1
Pseudomonas vancouverensis strain DhA-51 16 s ribosomal RNA gene, partial sequence 2215 2215 94% 0 98% NR_041953.1
Pseudomonas helmanticensis strain OHA11 16 s ribosomal RNA gene, partial sequence 2193 2193 94% 0 98% NR_126220.1
Pseudomonas baetica strain a390 16 s ribosomal RNA gene, partial sequence 2193 2193 94% 0 98% NR_116899.1
Pseudomonas jessenii strain CIP 105274 16 s ribosomal RNA gene, partial sequence 2185 2185 94% 0 98% NR_024918.1
Pseudomonas umsongensis strain Ps 3-10 16 s ribosomal RNA gene, partial sequence 2170 2170 94% 0 98% NR_025227.1
Pseudomonas mucidolens strain NBRC 103159 16 s ribosomal RNA gene, partial sequence 2167 2167 94% 0 98% NR_114225.1