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. 2016 Aug 18;4:e2275. doi: 10.7717/peerj.2275

Table 1. Orthologous genes involved in DMSP degradation and TDA biosynthesis in Pseudovibrio sp. P12 genome.

Accession numbers available in NCBI (http://www.ncbi.nlm.nih.gov/genbank/).

Gene Function Percent of identity (%) Accession number
DddD L-carnitine dehydratase 70a KM819464
DddT BCCT transporter 70a KM819465
DddB Alcohol dehydrogenase 70a KM819466
DddC Methylmalonate-semialdehyde dehydrogenase 56a KM819467
DddR Transcriptional regulator, LysR family protein 53a KM819468
DmdA Aminomethyl transferase family protein 24b KU521525
DmdB Acyl-CoA synthetase 30b KU521526
DmdC MMPA-CoA dehydrogenase 43b KU521527
DmdD MTA-CoA hydratase 32b KU521528
Alma1 Hypothetical Alma1 ortholog 99c KU521524
tdaA Transcriptional regulator, LysR family protein 66d KU760700
tdaB Glutathione S-transferase domain protein 67d KU760701
tdaC Prephenate dehydratase 67d KU760702
tdaD Acyl-CoA thioester hydrolase 81d KU760703
tdaE Acyl-CoA dehydrogenase 69d KU760704
tdaF Phosphopantothenoylcysteine decarboxylase 72d KU760705
cysI Sulfite reductase hemoprotein beta-component 76e KU760706
malY Cystathione beta-lyase 68e KU760707
paaI Phenylacetate-CoA oxygenase 59f KU760708
paaJ Phenylacetate-CoA oxygenase, PaaJ subunit 73g KU760709
paaK Phenylacetic acid degradation oxidoreductase 57g KU760710

Notes:

Percent of similarity compared to:

a

Marinomonas sp. MWYl1 (Todd et al., 2007);

b

Ruegeria pomeroyi DSS-3 (Reisch et al., 2011);

c

Pseudovibrio sp. FO-BEG1 (Alcolombri et al., 2015);

d

Phaeobacter inhibens (Brock, Nikolay & Dickschat, 2014);

e

Nesiotobacter exalbescens;

f

Rhodopseudomonas palustris;

g

Stappia stellulata.