Table 1. Orthologous genes involved in DMSP degradation and TDA biosynthesis in Pseudovibrio sp. P12 genome.
Accession numbers available in NCBI (http://www.ncbi.nlm.nih.gov/genbank/).
Gene | Function | Percent of identity (%) | Accession number |
---|---|---|---|
DddD | L-carnitine dehydratase | 70a | KM819464 |
DddT | BCCT transporter | 70a | KM819465 |
DddB | Alcohol dehydrogenase | 70a | KM819466 |
DddC | Methylmalonate-semialdehyde dehydrogenase | 56a | KM819467 |
DddR | Transcriptional regulator, LysR family protein | 53a | KM819468 |
DmdA | Aminomethyl transferase family protein | 24b | KU521525 |
DmdB | Acyl-CoA synthetase | 30b | KU521526 |
DmdC | MMPA-CoA dehydrogenase | 43b | KU521527 |
DmdD | MTA-CoA hydratase | 32b | KU521528 |
Alma1 | Hypothetical Alma1 ortholog | 99c | KU521524 |
tdaA | Transcriptional regulator, LysR family protein | 66d | KU760700 |
tdaB | Glutathione S-transferase domain protein | 67d | KU760701 |
tdaC | Prephenate dehydratase | 67d | KU760702 |
tdaD | Acyl-CoA thioester hydrolase | 81d | KU760703 |
tdaE | Acyl-CoA dehydrogenase | 69d | KU760704 |
tdaF | Phosphopantothenoylcysteine decarboxylase | 72d | KU760705 |
cysI | Sulfite reductase hemoprotein beta-component | 76e | KU760706 |
malY | Cystathione beta-lyase | 68e | KU760707 |
paaI | Phenylacetate-CoA oxygenase | 59f | KU760708 |
paaJ | Phenylacetate-CoA oxygenase, PaaJ subunit | 73g | KU760709 |
paaK | Phenylacetic acid degradation oxidoreductase | 57g | KU760710 |
Notes:
Percent of similarity compared to:
Marinomonas sp. MWYl1 (Todd et al., 2007);
Ruegeria pomeroyi DSS-3 (Reisch et al., 2011);
Pseudovibrio sp. FO-BEG1 (Alcolombri et al., 2015);
Phaeobacter inhibens (Brock, Nikolay & Dickschat, 2014);
Nesiotobacter exalbescens;
Rhodopseudomonas palustris;
Stappia stellulata.