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. 2016 May 13;44(13):e117. doi: 10.1093/nar/gkw430

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© The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 5. — Demonstration of GUI and TSCAN analysis of HSMM data using all genes for pseudo-time reconstruction. (A) MST constructed by TSCAN using all genes. (B) Users can choose a marker gene in GUI to visualize its expression. (C) Users can define a path by specifying the clusters to include and their ordering. (D) The average expression of SPHK1 in each cluster. (E) The average expression of ENO3 in each cluster.