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. 2016 Aug 24;16(1):183. doi: 10.1186/s12870-016-0877-2

Table 2.

Clustered single and multi-environment QTL detected in TC and TS populations

Traita Chrom. QTL Int. (cM) Support interval Peak (cM) Peak interval LOD σ2 (%) Add σ2 A σ2 E h 2
A) Topas/AG-Castle
 W09 S A01 54–67.5 sR9564 - sN12790 59 sN11665 - sN12790 5.20 8.32 4.61
 H09 S A01 68–69 sN12790 - sN4638 69 sR8420 - sN4638 17.20 15.84 7.80
 W10 S A01 68–69 sN12790 - sN4638 69 sR8420 - sN4638 24.25 29.90 9.31
 W10 II A01 68–69 sN12790 - sN4638 69 sR8420 - sN4638 9.08 11.52 4.90
  MET II A01 69 sR8420 - sN4638 69 sR8420 - sN4638 34.85 20.55 6.53 12.06 8.49 0.59
  MET S A01 68.5–69 sN12790 - sN4638 69 sR8420-sN4638 41.47 15.84 5.79 10.80 5.04 0.68
 H09 II A01 69–69.5 sR8420 - sN12176 69.5 sN4638 - sN12176 25.71 31.77 14.01
 CotQTL A07 73.5–74 sNRA59 - sR12387b 73.5 Rlm3 - sR12829 72.37 72.18 23.29
 H09 S A08 34.5–42.5 sN4513Fa - sNRB88 39 sN4513Fa - sNRG04 8.96 7.63 5.49
 W09 S A08 34.5–42.5 sN4513Fa - sNRB88 39 sN4513Fa - sNRG04 4.45 7.05 4.32
  MET S A08 37.5–42 sN4513Fa - sNRB88 39 sN4513Fa - sNRG04 13.59 5.13 3.51 3.85 1.28 0.75
 H09 II A08 39.5–47.5 sNRG04 - sN12352a 41 sNRG04 - sNRB88 7.42 7.85 7.08
  MET II A08 39.5–46.5 sNRG04 - sN12352a 41.5 sNRG04 - sNRB88 10.29 5.26 3.39 3.16 2.10 0.60
 W10 S A08 43–50.5 sNRB88 - sR9433 46 sNRB88 - sN12352a 8.34 9.08 5.19
 W09 II C06b 21–22 brPb - 841625 - brPb - 841355 21.5 brPb - 841625 - brPb - 841355 3.04 5.17 3.50
 H09 S C06b 23.5–45 brPb - 841355 - sN12461Ix 40 brPb - 841355 - sN12461Ix 14.59 14.08 7.42
 CotQTL C06b 23.5–45 brPb - 841355 - sN12461Ix 40 brPb - 841355 - sN12461Ix 4.71 9.26 7.25
  MET S C06b 36.5–45 brPb - 841355 - sN12461Ix 42.5 brPb - 841355 - sN12461Ix 25.99 9.22 5.06 8.12 1.10 0.88
 W10 II C06b 23.5–45 brPb - 841355 - sN12461Ix 44.5 brPb - 841355 - sN12461Ix 5.88 7.35 3.94
 H09 II C06b 23.5–45 brPb - 841355 - sN12461Ix 45 brPb - 841355 - sN12461Ix 10.44 11.07 8.34
 W10 S C06b 23.5–45 brPb - 841355 - sN12461Ix 45 brPb - 841355 - sN12461Ix 10.00 10.83 5.65
  MET II C06b 38–45 brPb - 841355 - sN12461Ix 45 brPb - 841355 - sN12461Ix 16.44 7.83 4.30 5.14 2.70 0.66
B) Topas/AV-Sapphire
 H12 S A01 30.5–39 sR9228a - sR9555x 36.5 sR6202b - sR9555x 4.3901 10.10 5.33
  MET S A01 33.5–39 sR9228a - sR9555x 36.5 sR6202b - sR9555x 13.1741 10.07 5.04 8.71 1.36 0.86
 W11 II A01 30.5–39 sR9228a - sR9555x 37.5 sR6202b - sR9555x 3.4382 11.07 4.39
 W11 S A01 30.5–39 sR9228a - sR9555x 39 sR6202b - sR9555x 6.352 18.47 8.21
 H12 II A01 36.5–40 sR6202b - sN12176 39.5 sR9555x - sN12176 3.3711 9.00 4.08
  MET II A01 36.5–40 sR6202b - sN12176 40 sR9555x - sN12176 7.8313 5.02 4.20 4.74 0.28 0.94
 CotQTL A07 48–56.5 sN2555Ra - Rlm4 56 sN2555Ra - Rlm4 30.80 48.92 19.16
 W11 II A09 5–19.5 sS2212 - sR9373 8 sR6410 - sR9373 5.35 16.38 5.41
 H12 II A09 6.5–14.5 sS2212 - sR9373 8 sR6410 - sR9373 3.05 8.12 3.92
 W11 S A09 5–19.5 sS2212 - sR9373 8 sR6410 - sR9373 5.34 15.00 7.48
  MET S A09 6.5–12.5 sS2212 - sR9373 8 sR6410 - sR9373 10.41 9.18 4.67 7.33 1.86 0.80
 W09 II A09 8–11.5 sR6410 - sR9373 8.5 sR6410 - sR9373 2.89 11.83 6.68
  MET II A09 8–14 sR6410 - sR9373 9.5 sR6410 - sR9373 13.97 9.66 5.88 9.10 0.56 0.94
 H08 II A09 21–29 sR9373 - sR6966 25 sR9373 - sR6966 3.43 12.31 9.82
 H12 S A09 21.5–33.5 sR9373 - sR12078a 27.5 sR9373 - sR6966 3.41 9.47 5.19
 H08 II C06 38–60 sS2486a - sN5088F 52.5 sS2486a - sR12387a 4.79 19.31 12.24
 H12 S C06 35.5–60 sS2486a - sN5088F 54.5 sS2486a - sR12387a 6.91 22.18 7.88
 H12 II C06 40.5–60 sS2486a - sN5088F 56.5 sS2486a - sR12387a 4.55 13.63 5.00
  MET II C06 50.5–58.5 sS2486a - sN5088F 57 sS2486a - sR12387a 10.84 9.67 4.97 6.69 2.98 0.69
 H08 S C06 43–60 sS2486a - sN5088F 58 sS2486a - sR12387a 4.58 15.26 4.73
  MET S C06 53.5–58.5 sS2486a - sN5088F 58 sS2486a - sR12387a 14.65 9.34 5.04 8.76 0.58 0.94

Significant QTL shown only (Single environment QTL > 5 σ2(%), MET QTL > 5 σ2(%) and h 2 > 0.5)

aSingle environment (plain) and multi-environment (bold) QTL, single-environment trait names given as location (H = Horsham, W = Wagga Wagga), year (08–12 = 2008–2012) and metric (S = survival, II = internal infection), MET = Multi-environment traits (all environments) for S (survival) and MET II (internal infection) metrics, CotQTL = single-isolate cotyledon tests. Chrom. = B. napus chromosome; QTL Int. (cM) = QTL interval (in centiMorgans); Support Interval = map interval, defined by flanking markers, which contains QTL (LOD > significance threshold); Peak (cM) = Position of Peak LOD value (in centiMorgans); Peak Interval = map interval containing QTL peak LOD; LOD = peak logarithm of odds; σ2(%) = variance (total percentage); Add = additive effect (positive score indicates net genetic contribution from AG-Castle or AV-Sapphire parent); σ² A variance (additive) portion (%), σ² E variance (environmental) portion (%), h 2 heritability (σ² A/σ² (%))