TABLE 1.
Deleted regions in N. brasiliensis P-200a
| Region no. | Deleted region |
Gene | Protein | Corresponding region in reference sequence |
Organism(s) with ortholog | NCBI COG | ||
|---|---|---|---|---|---|---|---|---|
| Start position | End position | Start position | End position | |||||
| 1 | 541011 | 541445 | 03I_002340 | Clp protease | 540929 | 543247 | Nocardia cyriacigeorgica, Nocardia farcinica, Rhodococcus jostii | COG0542 |
| 2 | 1449785 | 1450050 | Intergenic region | |||||
| 3 | 1453274 | 1453310 | Intergenic region | |||||
| 4 | 1501900 | 1533608 | 03I_006545 | Putative drug resistance transporter | 1500162 | 1502150 | N. cyriacigeorgica, N. farcinica | COG0477 |
| 03I_006550 | PadR family transcriptional regulator | 1502234 | 1502887 | N. cyriacigeorgica, N. farcinica | COG1695 | |||
| 03I_006555 | Monooxygenase, FAD-binding protein | 1503068 | 1504273 | N. cyriacigeorgica, N. farcinica | COG0654 | |||
| 03I_006560 | ATP-binding transport protein NatA | 1504341 | 1505108 | N. brasiliensis | COG1131 | |||
| 03I_006565 | Hypothetical protein | 1505093 | 1506658 | N. brasiliensis | ||||
| 03I_006570 | LysR family transcriptional regulator | 1506719 | 1507639 | N. brasiliensis | COG0583 | |||
| 03I_006575 | XRE family transcriptional regulator | 1507644 | 1508447 | N. cyriacigeorgica, R. jostii | COG1396 | |||
| 03I_006580 | Hypothetical protein | 1508578 | 1509024 | N. cyriacigeorgica | ||||
| 03I_006585 | Hypothetical protein | 1509060 | 1509791 | N. cyriacigeorgica, R. jostii | ||||
| 03I_006590 | Haloalkane dehalogenase | 1510380 | 1511252 | N. cyriacigeorgica | COG0596 | |||
| 03I_006595 | Putative RNA polymerase ECF-type sigma factor | 1511337 | 1512200 | N. cyriacigeorgica | COG1595 | |||
| 03I_006600 | C4-dicarboxylate transporter/malic acid transport protein | 1512157 | 1513347 | N. cyriacigeorgica, R. jostii | COG1275 | |||
| 03I_006605 | LysR family transcriptional regulator | 1513418 | 1514326 | N. cyriacigeorgica, R. jostii | COG0583 | |||
| 03I_006610 | Phosphate uptake regulator PhoU | 1514345 | 1515028 | N. cyriacigeorgica, N. farcinica | COG0704 | |||
| 03I_006615 | Transglutaminase domain-containing protein | 1515153 | 1515956 | R. jostii | COG1305 | |||
| 03I_006620 | Na-Ca exchanger/integrin-beta4 | 1515963 | 1516991 | N. brasiliensis | ||||
| 03I_006625 | Pyridoxamine 5′-phosphate oxidase-related FMN-binding protein | 1518688 | 1519095 | N. cyriacigeorgica | COG3467 | |||
| 03I_006630 | Transporter | 1519200 | 1520300 | N. farcinica, R. jostii | COG0387 | |||
| 03I_006635 | YrbE family protein | 1520752 | 1520752 | N. cyriacigeorgica, N. farcinica | COG0767 | |||
| 03I_006640 | YrbE family protein | 1521601 | 1522467 | N. cyriacigeorgica, N. farcinica | COG0767 | |||
| 03I_006645 | Mce family protein | 1522498 | 1522498 | N. cyriacigeorgica, N. farcinica | COG3008 | |||
| 03I_006650 | Mce family protein | 1523496 | 1524497 | N. cyriacigeorgica, N. farcinica | COG1463 | |||
| 03I_006655 | Mce family protein | 1524485 | 1525519 | N. cyriacigeorgica, N. farcinica | COG1463 | |||
| 03I_006660 | Mce family protein | 1525489 | 1526604 | N. cyriacigeorgica, N. farcinica | COG1463 | |||
| 03I_006665 | Mce family protein | 1526601 | 1526601 | N. cyriacigeorgica, N. farcinica | COG0282 | |||
| 03I_006670 | Mce family protein | 1527728 | 1527728 | N. cyriacigeorgica, N. farcinica | COG1463 | |||
| 03I_006675 | Hypothetical protein | 1528699 | 1529298 | N. cyriacigeorgica, N. farcinica | ||||
| 03I_006680 | Hypothetical protein | 1529433 | 1529433 | N. brasiliensis | ||||
| 03I_006685 | Aminoglycoside O-phosphotransferase | 1530067 | 1530951 | N. cyriacigeorgica, N. farcinica, R. jostii | COG3570 | |||
| 03I_006690 | Short-chain dehydrogenase/reductase SDR | 1530978 | 1530978 | N. brasiliensis | COG1028 | |||
| 03I_006695 | Signal transduction histidine kinase | 1532065 | 1533246 | N. brasiliensis | COG4585 | |||
| 03I_006700 | Two-component LuxR family transcriptional regulator | 1533243 | 1533890 | N. brasiliensis | COG2197 | |||
| 5 | 2271950 | 2277016 | 03I_Or42277 | 16S rRNA | 2271959 | 2273488 | ||
| 6 | 2372465 | 2372842 | 03I_010455 | Glyoxylate carboligase | 2372219 | 2373994 | COG3960 | |
| 7 | 2578134 | 2578295 | Intergenic region | |||||
| 8 | 2933006 | 2933045 | Intergenic region | |||||
| 9 | 3597423 | 3597782 | 03I_016110 | DNA-directed RNA polymerase subunit beta (RpoB) | 3596307 | 3599822 | N. cyriacigeorgica, N. farcinica, R. jostii | |
| 10 | 3901876 | 3903739 | 03I_Or42279 | 16S rRNA | 3902217 | 3903746 | ||
| 11 | 3904013 | 3907228 | Intergenic region | |||||
| 12 | 4429801 | 4429809 | Intergenic region | |||||
| 13 | 4795932 | 5012300 | 03I_021225 | Gamma-glutamyltransferase | 4795342 | 4797141 | N. brasiliensis | COG0405 |
| 03I_021230 | Methyltransferase | 4797178 | 4798242 | N. brasiliensis | COG0500 | |||
| 03I_021235 | Cytochrome P-450 | 4798239 | 4799441 | R. jostii | COG2124 | |||
| 03I_021240 | Alcohol dehydrogenase GroES domain-containing protein | 4799438 | 4800493 | N. brasiliensis | COG1064 | |||
| 03I_021245 | Aldehyde dehydrogenase | 4800513 | 4802000 | N. farcinica, R. jostii | COG1012 | |||
| 03I_021250 | Putative amidotransferase | 4802029 | 4803891 | R. jostii | COG0367 | |||
| 03I_021255 | ABC transporter | 4803936 | 4806227 | N. cyriacigeorgica, N. farcinica, R. jostii | COG0178 | |||
| 03I_021260 | Short-chain fatty acid MFS superfamily protein | 4806415 | 4807854 | R. jostii | COG2031 | |||
| 03I_021265 | Hypothetical protein | 4807919 | 4808521 | N. brasiliensis | ||||
| 03I_021270 | Hypothetical protein | 4808582 | 4809127 | N. farcinica | ||||
| 03I_021275 | Hypothetical protein | 4809244 | 4810527 | N. brasiliensis | ||||
| 03I_021280 | Hypothetical protein | 4810655 | 4811164 | N. farcinica | COG2259 | |||
| 03I_021285 | Hypothetical protein | 4811244 | 4812002 | N. farcinica, R. jostii | COG3384 | |||
| 03I_021290 | MarR family transcriptional regulator | 4812093 | 4812554 | N. farcinica, R. jostii | COG1846 | |||
| 03I_021295 | NADP-dependent oxidoreductase domain-containing protein | 4812632 | 4813675 | R. jostii | COG0667 | |||
| 03I_021300 | Abortive infection protein | 4813887 | 4814675 | N. brasiliensis | COG1266 | |||
| 03I_021305 | Dioxygenase | 4814780 | 4815688 | N. farcinica | COG2175 | |||
| 03I_021310 | Transporter | 4815883 | 4816527 | N. farcinica | COG1174 | |||
| 03I_021315 | ABC transporter ATP-binding protein | 4816524 | 4817804 | N. farcinica | COG1125 | |||
| 03I_021320 | ABC transporter permease | 4817801 | 4818538 | N. farcinica | COG1174 | |||
| 03I_021325 | Transporter permease | 4818535 | 4819515 | N. farcinica | COG1732 | |||
| 03I_021330 | Hypothetical protein | 4819550 | 4820365 | N. farcinica, R. jostii | ||||
| 03I_021335 | Hypothetical protein | 4820488 | 4821048 | N. brasiliensis | ||||
| 03I_021340 | Nonribosomal peptide synthetase | 4821049 | 4841793 | N. cyriacigeorgica, N. farcinica, R. jostii | COG1020 | |||
| 03I_021345 | Hypothetical protein | 4841793 | 4857035 | N. cyriacigeorgica, N. farcinica, R. jostii | COG1020 | |||
| 03I_021350 | SARP family transcriptional regulator | 4857537 | 4860785 | N. brasiliensis | COG0745 | |||
| 03I_021355 | Hypothetical protein | 4860727 | 4861287 | N. brasiliensis | ||||
| 03I_021360 | Hypothetical protein | 4861313 | 4862404 | N. brasiliensis | COG0451 | |||
| 03I_021365 | Nonribosomal peptide synthetase | 4862392 | 4863786 | N. brasiliensis | COG1020 | |||
| 03I_021370 | Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase | 4863783 | 4864988 | R. jostii | COG0624 | |||
| 03I_021375 | UbiE/COQ5 family methyltransferase | 4865045 | 4865869 | N. brasiliensis | COG0500 | |||
| 03I_021380 | Alcohol dehydrogenase | 4866058 | 4867254 | N. farcinica, R. jostii | COG1454 | |||
| 03I_021385 | Sensor histidine kinase | 4867244 | 4868566 | N. brasiliensis | ||||
| 03I_021390 | d-3-Phosphoglycerate dehydrogenase | 4868598 | 4869608 | R. jostii | COG0111 | |||
| 03I_021395 | Phosphoenolpyruvate phosphomutase | 4869662 | 4870588 | N. brasiliensis | COG2513 | |||
| 03I_021400 | Phosphonopyruvate decarboxylase | 4870585 | 4871736 | N. brasiliensis | COG4032 | |||
| 03I_021405 | Aldehyde dehydrogenase | 4871726 | 4873117 | N. brasiliensis | COG1012 | |||
| 03I_021410 | Short-chain dehydrogenase/reductase SDR | 4873151 | 4873954 | N. brasiliensis | COG1028 | |||
| 03I_021415 | Polyketide synthase | 4873956 | 4874171 | N. brasiliensis | COG3321 | |||
| 03I_021420 | AMP-dependent synthetase and ligase | 4874171 | 4875613 | N. brasiliensis | COG0318 | |||
| 03I_021425 | Class III aminotransferase | 4875616 | 4876941 | N. brasiliensis | COG0160 | |||
| 03I_021430 | Hypothetical protein | 4876976 | 4877728 | N. brasiliensis | COG0842 | |||
| 03I_021435 | ABC transporter-like protein | 4877725 | 4878678 | N. brasiliensis | COG1131 | |||
| 03I_021440 | Penicillin-binding protein | 4878669 | 4879817 | N. brasiliensis, R. jostii | COG1680 | |||
| 03I_021445 | Pantoate–beta-alanine ligase PanC | 4879877 | 4880716 | N. brasiliensis | COG0414 | |||
| 03I_021450 | LuxR family transcriptional regulator | 4880906 | 4881586 | N. brasiliensis | COG2197 | |||
| 03I_021455 | Integral membrane sensor signal transduction histidine kinase | 4881576 | 4882817 | N. brasiliensis | COG4585 | |||
| 03I_021460 | Hypothetical protein | 4882983 | 4883552 | N. brasiliensis | ||||
| 03I_021465 | Hypothetical protein | 4883543 | 4883869 | N. brasiliensis | ||||
| 03I_021470 | Hypothetical protein | 4883931 | 4884668 | N. brasiliensis, N. farcinica, R. jostii | COG3393 | |||
| 03I_021475 | LuxR family transcriptional regulator | 4884766 | 4887378 | N. brasiliensis, R. jostii | COG1066 | |||
| 03I_021480 | Hypothetical protein | 4887544 | 4887990 | N. brasiliensis, R. jostii | ||||
| 03I_021485 | Hypothetical protein | 4888075 | 4888605 | N. brasiliensis | ||||
| 03I_021490 | Hypothetical protein | 4888830 | 4889687 | N. brasiliensis, N. farcinica | COG0693 | |||
| 03I_021495 | HTH-type transcriptional regulator GlxA | 4889733 | 4890743 | N. brasiliensis, N. cyriacigeorgica | COG4977 | |||
| 03I_021500 | Exonuclease SbcC | 4890883 | 4891464 | N. brasiliensis, N. farcinica, R. jostii | ||||
| 03I_021505 | Helix-turn-helix domain-containing protein | 4891566 | 4892396 | N. brasiliensis, N. cyriacigeorgica | COG2207 | |||
| 03I_021510 | Hypothetical protein | 4892421 | 4892924 | N. brasiliensis, N. cyriacigeorgica | ||||
| 03I_021515 | Hypothetical protein | 4893061 | 4893711 | N. brasiliensis | ||||
| 03I_021520 | Putative transcriptional regulator TetR | 4893718 | 4894305 | N. brasiliensis, N. farcinica | COG1309 | |||
| 03I_021525 | Phytanoyl-coenzyme A (CoA) dioxygenase (PhyH) family protein | 4894403 | 4895257 | N. brasiliensis, N. farcinica, R. jostii | COG5285 | |||
| 03I_021530 | Hypothetical protein | 4895383 | 4896189 | N. brasiliensis | ||||
| 03I_021535 | Peptidase M14 carboxypeptidase | 4896301 | 4897695 | N. brasiliensis | COG2866 | |||
| 03I_021540 | Glutamate-cysteine ligase GCS2 | 4897981 | 4899078 | N. brasiliensis | COG2170 | |||
| 03I_021545 | Hypothetical protein | 4899169 | 4899396 | N. brasiliensis | ||||
| 03I_021550 | Short-chain dehydrogenase | 4899479 | 4900318 | N. brasiliensis, N. cyriacigeorgica, N. farcinica, R. jostii | COG1028 | |||
| 03I_021555 | FAD-binding monooxygenase | 4900447 | 4902174 | N. brasiliensis | ||||
| 03I_021560 | Luciferase | 4902171 | 4903256 | N. brasiliensis | COG2141 | |||
| 03I_021565 | Pyridoxal-5′-phosphate-dependent protein subunit beta | 4903272 | 4904462 | N. brasiliensis | COG0498 | |||
| 03I_021570 | Opine dehydrogenase | 4904459 | 4905574 | N. brasiliensis, N. farcinica | ||||
| 03I_021575 | Acyl-CoA reductase | 4905577 | 4907022 | N. brasiliensis | ||||
| 03I_021580 | Hypothetical protein | 4907010 | 4908308 | N. brasiliensis | ||||
| 03I_021585 | Ferredoxin | 4908610 | 4908825 | N. brasiliensis | COG1141 | |||
| 03I_021590 | LuxE bioluminescence protein | 4908850 | 4909983 | N. brasiliensis | COG1541 | |||
| 03I_021595 | Acyltransferase LuxD | 4910022 | 4910987 | N. brasiliensis | ||||
| 03I_021600 | Sodium/hydrogen exchanger | 4910945 | 4912375 | N. brasiliensis | COG0475 | |||
| 03I_021605 | Fluorinating enzyme | 4912446 | 4913309 | N. brasiliensis | COG1912 | |||
| 03I_021610 | S-Adenosyl-l-homocysteine hydrolase | 4913437 | 4914891 | N. brasiliensis, N. cyriacigeorgica, N. farcinica, R. jostii | COG0499 | |||
| 03I_021615 | Methylthioadenosine phosphorylase | 4915122 | 4916000 | N. brasiliensis | COG0005 | |||
| 03I_021620 | Adenine phosphoribosyltransferase | 4916036 | 4916611 | N. brasiliensis | COG0503 | |||
| 03I_021625 | Translation initiation factor, aIF-2BI family protein | 4916581 | 4917585 | N. brasiliensis | COG0182 | |||
| 03I_021630 | Serine hydroxymethyltransferase GlyA | 4917783 | 4919630 | N. brasiliensis, R. jostii | COG0112 | |||
| 03I_021635 | DNA-binding regulatory protein | 4919638 | 4920213 | N. brasiliensis | COG1396 | |||
| 03I_021640 | Hypothetical protein | 4920272 | 4921222 | N. brasiliensis | COG0697 | |||
| 03I_021645 | Two-component system response regulator | 4921827 | 4922435 | N. brasiliensis | COG2197 | |||
| 03I_021650 | Universal stress protein UspA-like protein | 4922436 | 4922879 | N. brasiliensis | COG0589 | |||
| 03I_021655 | Hypothetical protein | 4922918 | 4923145 | N. brasiliensis | ||||
| 03I_021660 | Hypothetical protein | 4923186 | 4923701 | N. brasiliensis | COG2606 | |||
| 03I_021665 | OsmC-like protein | 4923894 | 4924364 | N. brasiliensis, R. jostii | COG1764 | |||
| 03I_021670 | Peptidase M15A | 4924375 | 4926096 | N. brasiliensis | COG3108 | |||
| 03I_021675 | Peptidase M15A | 4926115 | 4928226 | N. brasiliensis | ||||
| 03I_021680 | Hypothetical protein | 4928280 | 4929614 | N. brasiliensis | ||||
| 03I_021685 | Hypothetical protein | 4929628 | 4930167 | N. brasiliensis | ||||
| 03I_021690 | Hypothetical protein | 4930190 | 4931440 | N. brasiliensis | ||||
| 03I_021695 | Hypothetical protein | 4931440 | 4933926 | N. brasiliensis | ||||
| 03I_021700 | Hypothetical protein | 4933923 | 4934150 | N. brasiliensis | ||||
| 03I_021705 | SARP family transcriptional regulator | 4934354 | 4935067 | N. brasiliensis | COG3629 | |||
| 03I_021710 | Hypothetical protein | 4934996 | 4936714 | N. brasiliensis | ||||
| 03I_021715 | SARP family transcriptional regulator | 4936750 | 4937550 | N. brasiliensis | COG3629 | |||
| 03I_021720 | Alpha/beta-fold hydrolase | 4937701 | 4938486 | N. brasiliensis | COG0596 | |||
| 03I_021725 | Oxidoreductase | 4938581 | 4939534 | N. brasiliensis | COG0604 | |||
| 03I_021730 | TetR family transcriptional regulator | 4939638 | 4940246 | N. brasiliensis | COG1309 | |||
| 03I_021735 | FAD-linked oxidase domain-containing protein | 4940308 | 4941654 | N. brasiliensis | COG0277 | |||
| 03I_021740 | Hypothetical protein | 4941757 | 4942299 | N. brasiliensis, N. cyriacigeorgica, R. jostii | COG5485 | |||
| 03I_021745 | 4-Carboxymuconolactone decarboxylase | 4942296 | 4942679 | N. brasiliensis | COG0599 | |||
| 03I_021750 | 3-Oxoadipate enol-lactonase | 4942676 | 4943452 | N. brasiliensis, R. jostii | COG0596 | |||
| 03I_021755 | 3-Carboxy-cis,cis-muconate cycloisomerase | 4943449 | 4944795 | N. brasiliensis, R. jostii | COG0015 | |||
| 03I_021760 | Protocatechuate 3,4-dioxygenase alpha subunit | 4944788 | 4945312 | N. brasiliensis, R. jostii | COG3485 | |||
| 03I_021765 | Protocatechuate 3,4-dioxygenase beta subunit | 4945305 | 4946045 | N. brasiliensis, R. jostii | COG3485 | |||
| 03I_021780 | CoA transferase B subunit | 4947234 | 4948013 | N. brasiliensis, N. farcinica, R. jostii | COG2057 | |||
| 03I_021785 | CoA transferase A subunit | 4948010 | 4948825 | N. brasiliensis, N. farcinica, R. jostii | COG1788 | |||
| 03I_021790 | 4-Hydroxybenzoate 3-monooxygenase | 4948828 | 4950030 | N. brasiliensis, R. jostii | COG0654 | |||
| 03I_021795 | Transmembrane transport protein | 4950027 | 4951259 | N. brasiliensis, R. jostii | COG0477 | |||
| 03I_021800 | LysR family transcriptional regulator | 4951362 | 4952264 | N. brasiliensis, R. jostii | COG0583 | |||
| 03I_021805 | Glycosidase | 4952276 | 4954621 | N. brasiliensis, R. jostii | COG1554 | |||
| 03I_021810 | Hydrolase | 4954618 | 4955349 | N. brasiliensis, R. jostii | COG0637 | |||
| 03I_021825 | Hypothetical protein | 4956335 | 4957054 | N. brasiliensis, N. cyriacigeorgica, N. farcinica | COG2129 | |||
| 03I_021830 | DsbA oxidoreductase | 4957051 | 4957644 | N. brasiliensis | ||||
| 03I_021835 | Transcriptional regulator | 4957793 | 4958872 | N. brasiliensis | COG2207 | |||
| 03I_021840 | Cell surface protein | 4959086 | 4959961 | N. brasiliensis | ||||
| 03I_021845 | Hypothetical protein | 4960040 | 4960426 | N. brasiliensis | ||||
| 03I_021850 | Putative cysteine synthase | 4960527 | 4961639 | N. brasiliensis, N. cyriacigeorgica, N. farcinica | COG0031 | |||
| 03I_021855 | Putative MFS transporter | 4961636 | 4962907 | N. brasiliensis, N. cyriacigeorgica, N. farcinica | COG0477 | |||
| 03I_021860 | Amino acid binding protein | 4962998 | 4964092 | N. brasiliensis, R. jostii | ||||
| 03I_021865 | Sigma factor | 4964772 | 4965512 | N. brasiliensis | COG1191 | |||
| 03I_021870 | Hypothetical protein | 4965603 | 4965887 | N. brasiliensis | ||||
| 03I_021875 | AraC family transcriptional regulator | 4965976 | 4966569 | N. brasiliensis | COG2207 | |||
| 03I_021880 | Hypothetical protein | 4966735 | 4966926 | N. brasiliensis | ||||
| 03I_021885 | 5,10-Methylenetetrahydrofolate reductase | 4967383 | 4968366 | N. brasiliensis, N. cyriacigeorgica, N. farcinica, R. jostii | COG0685 | |||
| 03I_021890 | Hypothetical protein | 4968457 | 4968840 | N. brasiliensis, N. farcinica, R. jostii | ||||
| 03I_021895 | Glyoxalase/bleomycin resistance protein/dioxygenase | 4968853 | 4969248 | N. brasiliensis | COG0346 | |||
| 03I_021900 | Thimet oligopeptidase | 4969268 | 4971199 | N. brasiliensis | COG0339 | |||
| 03I_021905 | PadR-like family transcriptional regulator | 4971239 | 4971832 | N. brasiliensis | COG1695 | |||
| 03I_021910 | Ferredoxin | 4971845 | 4973587 | N. brasiliensis, R. jostii | COG1018 | |||
| 03I_021915 | Hypothetical protein | 4973826 | 4974689 | N. brasiliensis, N. cyriacigeorgica, N. farcinica | COG0596 | |||
| 03I_021920 | Hypothetical protein | 4974798 | 4975796 | N. brasiliensis, N. cyriacigeorgica, N. farcinica, R. jostii | ||||
| 03I_021925 | Methyltransferase | 4975793 | 4976491 | N. brasiliensis, N. cyriacigeorgica, N. farcinica, R. jostii | COG2890 | |||
| 03I_021930 | Hypothetical protein | 4976529 | 4976678 | N. brasiliensis, N. cyriacigeorgica, N. farcinica | COG3369 | |||
| 03I_021935 | Oxidoreductase | 4976757 | 4978205 | N. brasiliensis, N. cyriacigeorgica | COG0665 | |||
| 03I_021940 | Hypothetical protein | 4978223 | 4978432 | N. brasiliensis | ||||
| 03I_021945 | Catalase | 4978659 | 4980830 | N. brasiliensis, N. cyriacigeorgica, N. farcinica, R. jostii | COG0753 | |||
| 03I_021950 | Cytochrome P450 monooxygenase | 4980837 | 4982192 | N. brasiliensis | COG2124 | |||
| 03I_021955 | DNA ligase | 4982302 | 4984293 | N. brasiliensis, N. farcinica | COG0272 | |||
| 03I_021960 | Propionyl-CoA carboxylase beta chain (PCCase) (propanoyl-CoA:carbon dioxide ligase) | 4984482 | 4986032 | N. brasiliensis, N. cyriacigeorgica, N. farcinica, R. jostii | COG4799 | |||
| 03I_021965 | Hypothetical protein | 4986188 | 4986607 | N. brasiliensis | ||||
| 03I_021970 | Hypothetical protein | 4986612 | 4987046 | N. brasiliensis | ||||
| 03I_021975 | Serine/threonine protein kinase | 4987060 | 4988448 | N. brasiliensis | COG0515 | |||
| 03I_021980 | Hypothetical protein | 4988845 | 4990197 | N. brasiliensis, R. jostii | ||||
| 03I_021985 | Type 11 methyltransferase | 4990248 | 4991027 | N. brasiliensis | COG0500 | |||
| 03I_021990 | Hypothetical protein | 4991125 | 4991433 | N. brasiliensis | ||||
| 03I_021995 | Hypothetical protein | 4991467 | 4993941 | N. brasiliensis, R. jostii | ||||
| 03I_022000 | DNA-binding protein | 4994209 | 4995144 | N. brasiliensis | COG1396 | |||
| 03I_022005 | Monooxygenase FAD-binding protein | 4995520 | 4997040 | N. brasiliensis | COG0654 | |||
| 03I_022010 | Hypothetical protein | 4997078 | 4997308 | N. brasiliensis | ||||
| 03I_022015 | LysR family transcriptional regulator | 4997443 | 4998345 | N. brasiliensis | COG0583 | |||
| 03I_022020 | Cobalt ABC transporter ATPase | 4998379 | 4999098 | N. brasiliensis, R. jostii | COG1122 | |||
| 03I_022025 | ABC transporter permease | 4999095 | 4999856 | N. brasiliensis, R. jostii | COG0619 | |||
| 03I_022030 | Cobalamin (vitamin B12) biosynthesis CbiM protein | 4999857 | 5000921 | N. brasiliensis, R. jostii | COG0310 | |||
| 03I_022035 | ArsR family transcriptional regulator | 5001072 | 5001416 | N. brasiliensis | COG0640 | |||
| 03I_022040 | Hypothetical protein | 5001435 | 5002505 | N. brasiliensis | COG3236 | |||
| 03I_022045 | Cupin | 5002682 | 5003389 | N. brasiliensis, R. jostii | COG2140 | |||
| 03I_022050 | RNA polymerase factor sigma 70 | 5003373 | 5004428 | N. brasiliensis | COG1595 | |||
| 03I_022055 | NADPH:quinone reductase and related Zn-dependent oxidoreductase | 5004425 | 5005423 | N. brasiliensis | COG0604 | |||
| 03I_022060 | Hypothetical protein | 5005604 | 5006257 | N. brasiliensis, N. cyriacigeorgica, N. farcinica | ||||
| 03I_022065 | Putative AraC family transcriptional regulator | 5006364 | 5007230 | N. brasiliensis, N. cyriacigeorgica | COG2207 | |||
| 03I_022070 | Hydrolase | 5007230 | 5008423 | N. brasiliensis | COG1680 | |||
| 03I_022075 | Hypothetical protein | 5008639 | 5009004 | N. brasiliensis | COG0346 | |||
| 03I_022080 | Hypothetical protein | 5009015 | 5009701 | N. brasiliensis | COG5479 | |||
| 03I_022085 | MarR family transcriptional regulator | 5009886 | 5010323 | N. brasiliensis, N. cyriacigeorgica, R. jostii | COG1846 | |||
| 03I_022090 | Hypothetical protein | 5010400 | 5011047 | N. brasiliensis, N. cyriacigeorgica | ||||
| 03I_022095 | Hypothetical protein | 5011268 | 5011873 | N. brasiliensis | ||||
| 03I_022100 | Putative membrane porin | 5011922 | 5012581 | N. brasiliensis | COG0094 | |||
| 14 | 5025398 | 5027080 | 03I_022175 | Nitrate reductase Z subunit beta (NarY) | 5024840 | 5026579 | N. cyriacigeorgica, N. farcinica | COG1140 |
| 15 | 5029253 | 5029670 | 03I_022190 | Nitrate reductase Z subunit alpha (NarZ) | 5029170 | 5030117 | COG5013 | |
| 16 | 5393100 | 5393780 | 03I_023565 | Putative peptidase | 5392840 | 5393805 | N. brasiliensis | COG3590 |
| 17 | 5867835 | 5868021 | Intergenic region | |||||
a
The data were prepared by aligning the contigs obtained for P-200 with the reference sequence (accession number NC_18681.1) by using Sequencer software. The orthologous genes were determined by using BLAST searches.